Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.74□□□□□ -1.97
LMX1BO60663 Y_RNA.670-201ENST00000516255 105 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AP003122.3-201ENST00000526316 255 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.74□□□□□ -1.97
LMX1BO60663 AC084851.1-201ENST00000529105 249 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AP002404.1-201ENST00000532005 451 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AC025423.5-201ENST00000550230 219 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.74□□□□□ -1.97
LMX1BO60663 SNORD84-203ENST00000584275 78 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 MIR548AC-201ENST00000585049 88 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AP000654.2-201ENST00000605633 586 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.74□□□□□ -1.97
LMX1BO60663 AC099778.2-201ENST00000610904 211 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 MIR7106-201ENST00000612419 65 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.74□□□□□ -1.97
LMX1BO60663 SNORA50A-202ENST00000629536 136 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 AL669831.3-213ENST00000636676 183 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.74□□□□□ -1.97
LMX1BO60663 MTND5P19-201ENST00000424872 1794 ntBASIC2.74□□□□□ -1.97
LMX1BO60663 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
LMX1BO60663 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
LMX1BO60663 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
LMX1BO60663 AC009487.2-201ENST00000420969 6821 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1115P-201ENST00000362490 106 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 SNORD3E-201ENST00000362899 217 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 Y_RNA.112-201ENST00000363250 102 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-384P-201ENST00000364900 104 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 Y_RNA.445-201ENST00000384168 102 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1160P-201ENST00000384546 104 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 SNORA46-201ENST00000384762 135 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LMX1BO60663 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.73□□□□□ -1.97
LMX1BO60663 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.73□□□□□ -1.97
LMX1BO60663 RPL30P15-201ENST00000457129 321 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 snoU13.4-201ENST00000458916 104 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 Y_RNA.653-201ENST00000459091 95 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RPL31P13-201ENST00000484151 370 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 AC097462.2-201ENST00000504623 481 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1045P-201ENST00000516321 107 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1256P-201ENST00000516539 103 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1016P-201ENST00000516689 94 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1137P-201ENST00000517073 99 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 RNU6-1315P-201ENST00000517187 99 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.73□□□□□ -1.97
LMX1BO60663 AC087854.1-201ENST00000519706 414 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.73□□□□□ -1.97
LMX1BO60663 MIR3921-201ENST00000577308 85 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 MIR1273C-201ENST00000578669 77 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 MIR5690-201ENST00000583739 73 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.73□□□□□ -1.97
LMX1BO60663 ELOCP5-201ENST00000604924 333 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 AC018462.2-201ENST00000605375 395 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 MIR6128-201ENST00000615528 109 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
LMX1BO60663 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.73□□□□□ -1.97
LMX1BO60663 AC004944.1-201ENST00000517807 3059 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LMX1BO60663 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.73□□□□□ -1.97
LMX1BO60663 AL672296.1-201ENST00000427780 2158 ntBASIC2.73□□□□□ -1.97
LMX1BO60663 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LMX1BO60663 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.72□□□□□ -1.97
LMX1BO60663 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LMX1BO60663 SNORA5B-201ENST00000363786 132 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 RNU6-593P-201ENST00000364716 112 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 Y_RNA.480-201ENST00000384364 102 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 MIR607-201ENST00000385241 96 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
LMX1BO60663 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
LMX1BO60663 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LMX1BO60663 AL592148.1-201ENST00000413568 445 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.72□□□□□ -1.97
LMX1BO60663 AC018865.2-201ENST00000423631 129 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 HMGB1P9-201ENST00000429856 646 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.72□□□□□ -1.97
LMX1BO60663 HMGB1P12-201ENST00000438594 598 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 UQCRHP3-201ENST00000451503 251 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 MTND5P30-201ENST00000452896 1731 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.72□□□□□ -1.97
LMX1BO60663 SNORD5.1-201ENST00000458800 75 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 RPS20P22-201ENST00000473700 357 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 RPL31P60-201ENST00000478450 367 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AC097473.1-201ENST00000508142 408 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.72□□□□□ -1.97
LMX1BO60663 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.72□□□□□ -1.97
LMX1BO60663 AC008716.1-201ENST00000511084 513 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 SMURF2P1-201ENST00000514992 481 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AC009902.1-201ENST00000519351 183 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AC026371.1-201ENST00000551867 419 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 SNRPGP18-201ENST00000553000 214 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 TRAV37-201ENST00000553906 342 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.72□□□□□ -1.97
LMX1BO60663 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.72□□□□□ -1.97
LMX1BO60663 MIR5692A1-201ENST00000580523 69 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 AC002545.1-201ENST00000592511 181 ntBASIC2.72□□□□□ -1.97
LMX1BO60663 CYP2C61P-201ENST00000604072 290 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms