Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC024909.2-201ENST00000553035 286 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 MIR548AC-201ENST00000585049 88 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AL356292.1-201ENST00000283110 373 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 MIR21-201ENST00000362134 72 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 SNORA62.1-201ENST00000364287 154 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 RN7SKP226-201ENST00000364912 300 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 Y_RNA.296-201ENST00000364930 108 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-116P-201ENST00000384042 109 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 OR51A5P-201ENST00000415429 942 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AL365338.1-201ENST00000422282 858 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC116655.1-201ENST00000508324 901 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC105417.1-201ENST00000514691 285 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 RNU5F-8P-201ENST00000515941 111 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-685P-201ENST00000517088 95 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 ELOCP31-201ENST00000540463 467 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 DEFB131E-202ENST00000602581 683 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AC008945.2-201ENST00000606056 604 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 uc_338.14-201ENST00000613162 166 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.37□□□□□ -1.71
SHROOM4Q9ULL8 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 FO393413.1-201ENST00000402892 195 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 NDUFB1P2-201ENST00000449477 176 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 RN7SKP210-201ENST00000459176 261 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 RNA5SP445-201ENST00000515889 115 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-1053P-201ENST00000515930 101 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 AC069234.5-201ENST00000611056 416 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 AP001486.3-201ENST00000615334 372 ntBASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SHROOM4Q9ULL8 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 Y_RNA.40-201ENST00000362645 93 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 RNU1-51P-201ENST00000365345 176 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-898P-201ENST00000365627 104 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 Z98749.2-208ENST00000381646 500 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-1179P-201ENST00000384667 107 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 SNORA80E-201ENST00000384744 137 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 Y_RNA.582-201ENST00000391023 95 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 Y_RNA.623-201ENST00000411128 95 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 OR6C66P-201ENST00000414917 930 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 PTGES3P4-201ENST00000426243 356 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC022493.1-201ENST00000492984 337 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC104136.1-201ENST00000512969 394 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AP003392.2-201ENST00000527269 208 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 SUB1P2-201ENST00000556401 297 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC091152.3-201ENST00000604227 325 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AP000787.2-201ENST00000604432 568 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 AC092656.1-203ENST00000624134 423 ntBASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC4.35□□□□□ -1.71
SHROOM4Q9ULL8 RNU6-1119P-201ENST00000384349 108 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AL023284.1-201ENST00000403956 276 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AL663109.1-201ENST00000411498 844 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 RPL21P90-201ENST00000415692 466 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 RPS15AP7-201ENST00000439294 405 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC006512.1-201ENST00000468816 291 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC105313.1-201ENST00000509121 353 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 SCARNA17.1-201ENST00000516211 143 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 SNORD27.1-201ENST00000516319 72 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 SCARNA17.2-201ENST00000516334 143 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC023043.3-201ENST00000593113 385 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC008536.2-201ENST00000607284 349 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 SCARNA17.4-201ENST00000614296 143 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 AC136475.10-201ENST00000620253 385 ntBASIC4.34□□□□□ -1.71
SHROOM4Q9ULL8 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 OR5H15-201ENST00000383696 930 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 RNU6-1103P-201ENST00000384150 107 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 RNU6-606P-201ENST00000384721 111 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 RNU6-321P-201ENST00000410912 106 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 UBBP3-201ENST00000445497 241 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 HMGB1P30-201ENST00000492455 606 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 OR5AQ1P-201ENST00000527596 927 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 AC010329.5-201ENST00000623497 2174 ntBASIC4.33□□□□□ -1.72
SHROOM4Q9ULL8 RNU1-91P-201ENST00000364746 163 ntBASIC4.32□□□□□ -1.72
SHROOM4Q9ULL8 RNU6-1083P-201ENST00000384022 107 ntBASIC4.32□□□□□ -1.72
SHROOM4Q9ULL8 MIR147B-201ENST00000390185 80 ntBASIC4.32□□□□□ -1.72
SHROOM4Q9ULL8 AL591416.1-201ENST00000404015 867 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms