Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AL512633.1-201ENST00000399931 655 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 MIR888-201ENST00000401186 77 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P28-201ENST00000401418 483 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 SRIP2-201ENST00000428470 166 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 ERLEC1P1-201ENST00000433806 578 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 HMGB1P31-201ENST00000437242 427 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P2-201ENST00000440049 481 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC010099.1-201ENST00000455434 375 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P39-201ENST00000463605 483 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P93-201ENST00000480465 489 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC087190.1-201ENST00000484462 480 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC093591.1-201ENST00000491435 481 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P16-201ENST00000495531 483 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC116353.2-201ENST00000505332 712 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC008716.1-201ENST00000511084 513 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RN7SKP24-201ENST00000515888 284 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC118273.2-201ENST00000532092 465 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC020895.1-201ENST00000595362 272 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC073308.1-201ENST00000623696 305 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 AC024614.3-201ENST00000637860 256 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RNU6-715P-201ENST00000365204 103 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 Y_RNA.399-201ENST00000383955 105 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RNU6-38P-201ENST00000384085 107 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RNU6-393P-201ENST00000384475 107 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 MIR1261-201ENST00000408659 82 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RNU6-1025P-201ENST00000410629 104 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AC009969.1-201ENST00000438726 172 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RPS15AP27-201ENST00000449183 343 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RNU6-333P-201ENST00000459117 107 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 RPL21P99-201ENST00000480369 423 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AC103975.1-201ENST00000482506 483 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 HMGB1P30-201ENST00000492455 606 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AF235103.2-201ENST00000525753 346 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 U2.17-201ENST00000611454 95 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 U6.42-201ENST00000618440 107 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 CTSLP2-204ENST00000629029 392 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 AC099654.14-201ENST00000638599 341 ntBASIC3.04□□□□□ -1.92
DDX4Q9NQI0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX4Q9NQI0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 RNU6-1180P-201ENST00000364935 107 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 SNORA3.2-201ENST00000408221 125 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 RPL26P27-201ENST00000414397 437 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC009161.1-201ENST00000417306 376 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 HMGN2P30-201ENST00000423237 256 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 BRK1P2-201ENST00000442875 223 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC069439.1-201ENST00000494739 167 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 Y_RNA.654-201ENST00000497848 106 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 CENPUP1-201ENST00000526649 1202 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC078814.3-201ENST00000553036 491 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 MTCO3P23-201ENST00000561363 289 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 SNORD53-201ENST00000579969 78 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC008739.2-201ENST00000597006 317 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 AC006504.8-201ENST00000621046 635 ntBASIC3.03□□□□□ -1.92
DDX4Q9NQI0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX4Q9NQI0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.03□□□□□ -1.93
DDX4Q9NQI0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
DDX4Q9NQI0 MTND4P35-201ENST00000604257 1375 ntBASIC3.02□□□□□ -1.93
DDX4Q9NQI0 AC138915.1-201ENST00000565427 1685 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms