Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 RNU6-858P-201ENST00000362436 107 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 RNA5SP212-201ENST00000391223 107 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 USP9YP33-201ENST00000412220 421 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 USP9YP24-201ENST00000434374 697 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 USP9YP35-201ENST00000435696 412 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC108729.1-201ENST00000487812 947 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC018868.1-201ENST00000491307 315 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC104629.1-201ENST00000494226 508 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC104685.1-201ENST00000502445 371 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 RNU6-572P-201ENST00000516724 80 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 RNU6-64P-201ENST00000517119 105 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AP005597.4-201ENST00000526762 229 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 RPL30P11-203ENST00000598995 310 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 BNIP3P26-201ENST00000600827 554 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 BNIP3P9-201ENST00000603714 553 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC107952.2-201ENST00000606048 486 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC024060.1-201ENST00000607052 494 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 MIR6134-201ENST00000617606 109 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 MIR6515-201ENST00000619843 57 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 AP000943.4-201ENST00000622912 357 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC138627.2-201ENST00000624202 601 ntBASIC1.57□□□□□ -2.16
USP42Q9H9J4 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.57□□□□□ -2.16
USP42Q9H9J4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.56□□□□□ -2.16
USP42Q9H9J4 RNU6-701P-201ENST00000384059 107 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 SNORA8-201ENST00000384574 139 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 MIR19A-201ENST00000384878 82 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 MIR95-201ENST00000385072 81 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC127391.1-201ENST00000411737 98 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC012308.1-201ENST00000451232 178 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC006512.1-201ENST00000468816 291 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.56□□□□□ -2.16
USP42Q9H9J4 RNU6-667P-201ENST00000517186 102 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 MIR151B-201ENST00000584249 96 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC068620.3-201ENST00000602749 560 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 SNRPGP17-201ENST00000603780 214 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC083806.3-201ENST00000614016 455 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 AC006338.1-201ENST00000618453 749 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 MIR6788-201ENST00000618842 66 ntBASIC1.56□□□□□ -2.16
USP42Q9H9J4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USP42Q9H9J4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 MIR222-201ENST00000384992 110 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 RNU11-3P-201ENST00000391111 133 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 AL033519.2-201ENST00000403958 392 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 AC005094.1-201ENST00000440420 368 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 BRK1P2-201ENST00000442875 223 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 AP000542.1-201ENST00000448473 371 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 AC117503.1-201ENST00000472241 394 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 SUMO2P5-201ENST00000506790 245 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 RNU6-586P-201ENST00000517265 104 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.55□□□□□ -2.16
USP42Q9H9J4 AC131235.4-201ENST00000609288 620 ntBASIC1.55□□□□□ -2.16
USP42Q9H9J4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 MIR126-201ENST00000362291 85 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 SNORD114-19-201ENST00000363072 75 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 SNORD114-26-201ENST00000363543 72 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC069282.1-201ENST00000411911 526 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 MTND5P25-201ENST00000430499 799 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
USP42Q9H9J4 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC092451.2-201ENST00000538746 658 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL356432.3-201ENST00000568952 465 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 MTND4LP25-201ENST00000570218 163 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AL078605.1-201ENST00000603529 500 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC096772.1-201ENST00000609146 564 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC090517.3-201ENST00000625170 141 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 AC092192.1-201ENST00000633154 1018 ntBASIC1.54□□□□□ -2.16
USP42Q9H9J4 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
USP42Q9H9J4 RNU6-188P-201ENST00000364207 107 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 RNU4-42P-201ENST00000364738 142 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 Y_RNA.311-201ENST00000365068 96 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
USP42Q9H9J4 MIR548J-201ENST00000408833 112 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
USP42Q9H9J4 NEFMP1-201ENST00000443423 1006 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms