Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.404-201ENST00000383978 102 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 RNU6-76P-201ENST00000384060 104 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.500-201ENST00000384466 111 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 RNA5SP219-201ENST00000390940 113 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AL360182.1-201ENST00000397433 468 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 BX682237.1-201ENST00000415016 335 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AL139396.1-201ENST00000421137 167 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AL590632.1-201ENST00000424289 371 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 HMGB1P12-201ENST00000438594 598 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 DYNLL1P5-201ENST00000467158 270 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 UBE2DNL-203ENST00000474922 222 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC079140.5-201ENST00000507882 310 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC097473.1-201ENST00000508142 408 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC108078.2-201ENST00000510750 236 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 TBCAP3-201ENST00000512475 312 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 RNU6-189P-201ENST00000516120 101 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 RNU6-685P-201ENST00000517088 95 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 SNORA31.22-201ENST00000517204 135 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 SNORD84-203ENST00000584275 78 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 ATP1B3P1-201ENST00000605365 821 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC093732.2-201ENST00000607950 274 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 uc_338.25-201ENST00000613756 156 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AL162373.1-201ENST00000620433 407 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC099506.2-201ENST00000623074 221 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AC092608.2-201ENST00000624427 218 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 AL049641.1-201ENST00000441055 1948 ntBASIC3.26□□□□□ -1.89
EBF3Q9H4W6 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
EBF3Q9H4W6 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNU6-7-201ENST00000364784 107 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNU6-8-201ENST00000365467 107 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 SMIM11P1-201ENST00000369586 178 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 SET-203ENST00000372688 801 ntTSL 2 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNY1P14-201ENST00000384426 108 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNU6-1222P-201ENST00000384615 107 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 MT-TG-201ENST00000387429 68 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 SNORA16.2-201ENST00000390991 127 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 MIR450B-201ENST00000401182 78 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AP000567.1-201ENST00000406413 156 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 MIR1302-3-201ENST00000408128 138 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNU4-46P-201ENST00000410818 138 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 ATG3P1-201ENST00000419507 911 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RPL7P37-201ENST00000425095 738 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 USP9YP16-201ENST00000430287 407 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 USP9YP23-201ENST00000455085 407 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RN7SL75P-201ENST00000461926 281 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 HIGD1AP13-201ENST00000509878 289 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RPL23AP94-201ENST00000512518 302 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RNU6-120P-201ENST00000516077 103 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC009902.1-201ENST00000519351 183 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 IGHV3-76-201ENST00000522465 295 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC090115.3-201ENST00000553218 849 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 OR4H12P-201ENST00000556269 907 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC010653.1-201ENST00000571108 881 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 RPL23AP84-201ENST00000571193 464 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC174048.1-201ENST00000603389 144 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 U4.1-201ENST00000620349 87 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC007998.5-201ENST00000622938 237 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC073476.4-201ENST00000628409 72 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 AC009812.4-201ENST00000569134 1805 ntBASIC3.25□□□□□ -1.89
EBF3Q9H4W6 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.25□□□□□ -1.89
EBF3Q9H4W6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AL672296.1-201ENST00000427780 2158 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 RNA5SP295-201ENST00000362655 121 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 Y_RNA.153-201ENST00000363615 91 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 U3.6-201ENST00000363622 211 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 SNORA63.7-201ENST00000365579 123 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
EBF3Q9H4W6 AC117470.1-201ENST00000381974 330 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 RNU6-946P-201ENST00000383878 107 ntBASIC3.24□□□□□ -1.89
EBF3Q9H4W6 RNU6-1074P-201ENST00000383995 104 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms