Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP001094.1-201ENST00000579805 193 ntBASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 MIR3941-201ENST00000582572 103 ntBASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 MIR4424-201ENST00000585257 86 ntBASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 AC012468.1-201ENST00000604888 430 ntBASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC28BQ9BUN5 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MTND4P35-201ENST00000604257 1375 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MIR412-201ENST00000362142 91 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MIRLET7G-201ENST00000362280 84 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.256-201ENST00000364594 104 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-534P-201ENST00000364877 106 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-198P-201ENST00000384258 104 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 SNORA51.11-201ENST00000384442 131 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AL606923.1-201ENST00000406616 190 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-1025P-201ENST00000410629 104 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 ARL5AP1-201ENST00000418991 388 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC098614.2-201ENST00000426040 255 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 NDUFB1P2-201ENST00000449477 176 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 RNU7-23P-201ENST00000459465 62 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC079140.5-201ENST00000507882 310 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC113155.1-201ENST00000511141 769 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-1178P-201ENST00000516674 107 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MTND4P7-201ENST00000523876 130 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AL391261.3-201ENST00000557194 520 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MTCO3P23-201ENST00000561363 289 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC068135.2-201ENST00000569293 1028 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MIR4444-1-201ENST00000581696 74 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MIR4444-2-201ENST00000584390 74 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 NRBF2P5-201ENST00000603087 788 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC007938.3-201ENST00000604965 623 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 AC068944.2-201ENST00000610373 403 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 U6.42-201ENST00000618440 107 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MIR6075-201ENST00000620782 95 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 U4.3-201ENST00000621047 82 ntBASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC28BQ9BUN5 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 NACAP2-201ENST00000318548 624 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.38-201ENST00000362617 102 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-451P-201ENST00000362921 107 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-884P-201ENST00000363889 107 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-877P-201ENST00000383868 107 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 Y_RNA.399-201ENST00000383955 105 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU1-73P-201ENST00000383971 164 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-434P-201ENST00000384376 107 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU6-1127P-201ENST00000384580 107 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 SNORA44-201ENST00000384584 132 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 SNORD37.1-201ENST00000390968 65 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 SNORA40C-201ENST00000391285 128 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AL139039.1-201ENST00000401900 692 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AL513475.1-201ENST00000406602 315 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNA5SP118-201ENST00000410385 109 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 HMGB3P2-201ENST00000411913 584 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RPL26P9-201ENST00000457466 433 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 SCARNA18-201ENST00000459004 134 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 HMGB1P30-201ENST00000492455 606 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC022493.1-201ENST00000492984 337 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC139453.3-201ENST00000493276 369 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 MTCO3P9-201ENST00000506989 781 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 RNU1-103P-201ENST00000516502 125 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC025755.1-201ENST00000521306 278 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 MIR4325-201ENST00000583049 90 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AL035413.2-201ENST00000604801 525 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC067747.1-201ENST00000608026 250 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC004852.3-201ENST00000614131 326 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 AC002553.4-201ENST00000616896 331 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 uc_338.34-201ENST00000617467 174 ntBASIC2.37□□□□□ -2.03
CCDC28BQ9BUN5 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms