Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC048346.1-201ENST00000510247 144 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AC004584.2-201ENST00000570407 410 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AC092106.3-201ENST00000611308 722 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AC138749.5-201ENST00000611461 208 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AC106858.1-201ENST00000637497 429 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 SNORD114-5-201ENST00000362928 70 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 MIR106A-201ENST00000384870 81 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 MIR644A-201ENST00000385262 94 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 NANOGP2-201ENST00000435391 727 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 AC021739.1-201ENST00000559631 174 ntBASIC-0.44□□□□□ -2.48
VPS13AQ96RL7 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 MIRLET7D-201ENST00000362263 87 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 RNU6-902P-201ENST00000517212 91 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 MIR4324-201ENST00000584846 72 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AL590410.1-201ENST00000617925 333 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 MIR103A1-201ENST00000362165 78 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 RNA5SP219-201ENST00000390940 113 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 SEPT2P1-201ENST00000419651 180 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AC092001.1-201ENST00000453012 261 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AP002453.2-201ENST00000533503 320 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 OR1M4P-201ENST00000589199 287 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AP000238.1-201ENST00000608759 426 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 RN7SL660P-201ENST00000614852 299 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AL049641.1-201ENST00000441055 1948 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 VPS26AP1-201ENST00000483197 979 ntBASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC-0.45□□□□□ -2.48
VPS13AQ96RL7 RNU6-600P-201ENST00000362524 99 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 RNA5SP109-201ENST00000391010 116 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 RPS15AP9-201ENST00000439856 381 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 SNORA40.12-201ENST00000516329 111 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 DHFRP6-201ENST00000401776 268 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 AL096803.2-201ENST00000450032 677 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 RNA5SP461-201ENST00000516451 104 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 AL356157.2-201ENST00000605122 111 ntBASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC-0.46□□□□□ -2.48
VPS13AQ96RL7 RNU6-546P-201ENST00000383991 107 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.490-201ENST00000384413 102 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 SNORA1.3-201ENST00000384676 136 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC092757.1-201ENST00000467293 467 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC008088.1-201ENST00000580993 280 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC073544.2-201ENST00000601155 540 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 LLPHP1-201ENST00000603571 367 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AL022345.2-201ENST00000606307 135 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 SNRPGP15-201ENST00000600149 222 ntBASIC-0.47□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.86-201ENST00000363020 111 ntBASIC-0.47□□□□□ -2.49
VPS13AQ96RL7 AL034374.1-201ENST00000406329 351 ntBASIC-0.47□□□□□ -2.49
VPS13AQ96RL7 AC116347.2-201ENST00000514912 523 ntBASIC-0.47□□□□□ -2.49
VPS13AQ96RL7 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC-0.47□□□□□ -2.49
VPS13AQ96RL7 AC018462.2-201ENST00000605375 395 ntBASIC-0.47□□□□□ -2.49
VPS13AQ96RL7 RNU6-338P-201ENST00000383888 105 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 EIF4EP2-201ENST00000422816 654 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AC018638.7-201ENST00000605836 1114 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AL078604.3-201ENST00000615580 211 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 MIR6076-201ENST00000617521 113 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 SCARNA17-201ENST00000516183 144 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 AC010738.1-201ENST00000604970 987 ntBASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.48□□□□□ -2.49
VPS13AQ96RL7 SNORD14C-201ENST00000365382 88 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 AL121839.1-201ENST00000556233 1185 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 TRAPPC2P4-201ENST00000421750 331 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 ELOCP6-201ENST00000429066 328 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 ELOCP12-201ENST00000458706 328 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 snoU13.9-201ENST00000458927 103 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 MTCO3P35-201ENST00000485582 781 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 RPL30P11-201ENST00000495304 339 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 RNU6-158P-201ENST00000517104 100 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 AC109810.1-201ENST00000534066 224 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 AC090330.1-201ENST00000588646 764 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 BNIP3P25-201ENST00000596023 559 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 AL031667.3-201ENST00000620124 655 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 SNORD115-24-201ENST00000363528 82 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 AC016909.1-201ENST00000415916 166 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 BX664727.1-201ENST00000416024 466 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms