Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 Y_RNA.359-201ENST00000365498 102 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 RNU6-190P-201ENST00000384154 102 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 SNORA75-201ENST00000384158 137 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MIR518D-201ENST00000385014 87 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MIR95-201ENST00000385072 81 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MIR561-201ENST00000385216 97 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 SNORA40C-201ENST00000391285 128 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AL133475.1-201ENST00000404414 305 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 RNU2-39P-201ENST00000410604 198 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AL031779.1-201ENST00000415663 330 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MTND3P17-201ENST00000416968 344 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC137499.1-201ENST00000427602 88 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AL358934.1-201ENST00000432346 324 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC079448.1-201ENST00000449377 373 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 FAM92A1P2-202ENST00000504766 877 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 MTCO3P28-201ENST00000513351 515 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 RNA5SP137-201ENST00000516833 135 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC087883.1-201ENST00000551882 391 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC006362.1-201ENST00000567392 174 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MIR4528-201ENST00000577763 90 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 MIR4672-201ENST00000583126 81 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC087045.1-201ENST00000605856 382 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC006566.1-201ENST00000608943 513 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC025034.2-201ENST00000623264 286 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
VPS39Q96JC1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.25□□□□□ -2.05
VPS39Q96JC1 AC073343.1-201ENST00000328239 651 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS39Q96JC1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS39Q96JC1 SNORD3E-201ENST00000362899 217 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 RNU6-61P-201ENST00000365528 109 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 SNORA46.1-201ENST00000391069 153 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 CISD1P1-201ENST00000393907 327 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AL445529.1-201ENST00000398713 389 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 MTND2P22-201ENST00000444325 1033 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AL360221.1-201ENST00000445989 335 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC003071.1-201ENST00000451219 789 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC104435.1-201ENST00000483483 166 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 RNU6-1315P-201ENST00000517187 99 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 RSL24D1P11-201ENST00000591045 491 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC174048.1-201ENST00000603389 144 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 Z84480.1-201ENST00000605131 311 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC096772.1-201ENST00000609146 564 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 AC008121.3-201ENST00000618726 433 ntBASIC2.24□□□□□ -2.05
VPS39Q96JC1 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
VPS39Q96JC1 FARSBP1-201ENST00000435808 1778 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNY1P12-201ENST00000364251 105 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNU4-91P-201ENST00000364778 135 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 Y_RNA.553-201ENST00000384670 102 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 SNORA67.4-201ENST00000384688 142 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 MIR1-2-201ENST00000384961 85 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNU6-1025P-201ENST00000410629 104 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNU2-8P-201ENST00000410727 190 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 C1DP2-201ENST00000418167 426 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 MED13P1-201ENST00000428342 171 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 SNRPFP4-201ENST00000456366 242 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNU6-956P-201ENST00000458868 103 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC022493.1-201ENST00000492984 337 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC010424.1-201ENST00000506336 297 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 SNORA48.11-201ENST00000517015 89 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC008521.1-201ENST00000587471 187 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 AL121917.1-203ENST00000605534 577 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC087752.4-201ENST00000605911 462 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC012409.4-201ENST00000612923 249 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 SDR42E1P4-201ENST00000620894 481 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 MIR6132-201ENST00000622083 109 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 AC243829.7-201ENST00000633081 225 ntBASIC2.23□□□□□ -2.05
VPS39Q96JC1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS39Q96JC1 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS39Q96JC1 RNU6-1159P-201ENST00000362933 107 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms