Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MIR4513-201ENST00000581077 86 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 MIR3124-201ENST00000582636 67 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 AC009314.1-201ENST00000603871 304 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 AC004852.3-201ENST00000614131 326 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.49□□□□□ -1.69
USP48Q86UV5 SCARNA4-202ENST00000625402 129 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.49□□□□□ -1.69
USP48Q86UV5 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.49□□□□□ -1.69
USP48Q86UV5 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP48Q86UV5 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
USP48Q86UV5 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP48Q86UV5 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP48Q86UV5 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.48□□□□□ -1.69
USP48Q86UV5 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
USP48Q86UV5 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.48□□□□□ -1.69
USP48Q86UV5 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP48Q86UV5 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP48Q86UV5 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP48Q86UV5 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.48□□□□□ -1.69
USP48Q86UV5 RPL9P7-201ENST00000330965 580 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 Y_RNA.47-201ENST00000362697 108 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 RNU6-1318P-201ENST00000365389 103 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
USP48Q86UV5 Y_RNA.645-201ENST00000391229 102 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AL513475.1-201ENST00000406602 315 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 RNU6-55P-201ENST00000411092 107 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AL513043.1-201ENST00000439124 535 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AL731563.1-201ENST00000442202 214 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.48□□□□□ -1.69
USP48Q86UV5 BTF3P15-201ENST00000455606 336 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 U8.21-201ENST00000459536 136 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 RPL9P9-202ENST00000466501 579 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AC026784.1-201ENST00000507986 352 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 SNORA25.10-201ENST00000515926 124 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 Y_RNA.661-201ENST00000516003 99 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 Y_RNA.687-201ENST00000516558 91 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 RNU6-794P-201ENST00000517261 64 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.48□□□□□ -1.69
USP48Q86UV5 H3F3AP1-201ENST00000559984 334 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 BNIP3P16-201ENST00000589779 534 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.48□□□□□ -1.69
USP48Q86UV5 AL162373.1-201ENST00000620433 407 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.48□□□□□ -1.69
USP48Q86UV5 U2.21-201ENST00000637295 81 ntBASIC4.48□□□□□ -1.69
USP48Q86UV5 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP48Q86UV5 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
USP48Q86UV5 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
USP48Q86UV5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP48Q86UV5 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.47□□□□□ -1.69
USP48Q86UV5 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP48Q86UV5 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
USP48Q86UV5 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.47□□□□□ -1.69
USP48Q86UV5 MIR423-201ENST00000362201 94 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU6-1317P-201ENST00000364582 104 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU5E-7P-201ENST00000365290 117 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU6-658P-201ENST00000384606 106 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU6-174P-201ENST00000410406 106 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 AC005326.1-201ENST00000429197 123 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 HMGB3P8-201ENST00000449709 577 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.47□□□□□ -1.69
USP48Q86UV5 RN7SL283P-201ENST00000489055 303 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU6-1183P-201ENST00000517054 60 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 RNU6-699P-201ENST00000517081 110 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 AC023442.1-201ENST00000531247 422 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.47□□□□□ -1.69
USP48Q86UV5 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.47□□□□□ -1.69
USP48Q86UV5 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.47□□□□□ -1.69
USP48Q86UV5 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.47□□□□□ -1.69
USP48Q86UV5 AC010653.1-201ENST00000571108 881 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 MIR3668-201ENST00000582138 75 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 AC104695.3-201ENST00000604052 296 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 AC012531.5-201ENST00000611375 151 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 uc_338.32-201ENST00000615087 172 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 MIR8057-201ENST00000620957 69 ntBASIC4.47□□□□□ -1.69
USP48Q86UV5 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.47□□□□□ -1.69
USP48Q86UV5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP48Q86UV5 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP48Q86UV5 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.47□□□□□ -1.69
USP48Q86UV5 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
USP48Q86UV5 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP48Q86UV5 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.46□□□□□ -1.69
USP48Q86UV5 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
USP48Q86UV5 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
USP48Q86UV5 SRP72P2-201ENST00000344851 1979 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 SNORD9-201ENST00000362566 104 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 RNU6-778P-201ENST00000363269 103 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 RNU6-72P-201ENST00000384285 79 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 RNU6-784P-201ENST00000384330 106 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 Y_RNA.500-201ENST00000384466 111 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 MIR888-201ENST00000401186 77 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 RN7SKP53-201ENST00000411337 315 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.46□□□□□ -1.7
USP48Q86UV5 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.46□□□□□ -1.7
USP48Q86UV5 NUP35P1-201ENST00000422734 947 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.46□□□□□ -1.7
USP48Q86UV5 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.46□□□□□ -1.7
USP48Q86UV5 AC005300.1-201ENST00000428401 373 ntBASIC4.46□□□□□ -1.7
USP48Q86UV5 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.46□□□□□ -1.7
USP48Q86UV5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.46□□□□□ -1.7
USP48Q86UV5 AC011816.1-201ENST00000441346 546 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms