Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ADAM3B-201ENST00000569937 840 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 MIR3937-201ENST00000580135 106 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 MIR4493-201ENST00000584016 73 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC011939.3-201ENST00000613686 466 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AL138726.1-201ENST00000614873 333 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AL109659.3-201ENST00000624985 950 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 U2.21-201ENST00000637295 81 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC092125.1-201ENST00000562568 1995 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 Y_RNA.35-201ENST00000362601 101 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 SNORD1A-201ENST00000364968 72 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 RNU6-741P-201ENST00000383889 107 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 USP9YP19-201ENST00000412165 485 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 USP9YP13-201ENST00000417797 480 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC009518.2-201ENST00000418056 731 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 PDCL2P1-201ENST00000419302 352 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 RPL23AP95-201ENST00000426806 265 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC092634.2-201ENST00000428146 1010 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AL392003.1-201ENST00000434394 243 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 NANOGP2-201ENST00000435391 727 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 RAC1P7-201ENST00000445367 377 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC124947.2-202ENST00000552735 133 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 MIR4661-201ENST00000582720 75 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC004492.1-201ENST00000607036 742 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 FTX_3.1-201ENST00000610451 147 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 MIR5739-201ENST00000619803 80 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 AC092192.1-201ENST00000633154 1018 ntBASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
CSPG4Q6UVK1 RNU6-444P-201ENST00000383988 108 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 MT-TC-201ENST00000387405 66 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AL355615.1-201ENST00000406187 641 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RNU2-36P-201ENST00000410361 191 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RPL37P21-201ENST00000435890 276 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 MTND1P16-201ENST00000465177 898 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 COX6CP6-201ENST00000490840 228 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AL133373.1-201ENST00000497098 94 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 MTCYBP16-201ENST00000509187 1129 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC087897.1-201ENST00000550134 156 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 CYP3A52P-201ENST00000563326 91 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC007792.1-201ENST00000623023 402 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RNA5SP98-201ENST00000363158 137 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RNU6-112P-201ENST00000363599 104 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RNU6-884P-201ENST00000363889 107 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 SNORA25-201ENST00000384384 134 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 MTCO1P44-201ENST00000441935 243 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 Y_RNA.644-201ENST00000459006 113 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC112771.1-201ENST00000463581 102 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 RPL36AP48-201ENST00000485521 314 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 C1DP5-201ENST00000525775 383 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 BBIP1P1-201ENST00000602999 279 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 MIR8065-201ENST00000620577 100 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 AC009033.1-201ENST00000624279 431 ntBASIC0.24□□□□□ -2.37
CSPG4Q6UVK1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 MIR514A1-201ENST00000385133 98 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 TAF9BP2-201ENST00000400856 499 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AL449283.1-202ENST00000418249 604 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 MTND4LP10-201ENST00000435146 291 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 PNPLA4P1-201ENST00000458328 305 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 RNU6-902P-201ENST00000517212 91 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AL021879.1-201ENST00000611756 288 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AL359314.1-201ENST00000616913 261 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 AC018926.3-201ENST00000618841 406 ntBASIC0.23□□□□□ -2.37
CSPG4Q6UVK1 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MIR424-201ENST00000362227 98 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MIR561-201ENST00000385216 97 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 USP9YP18-201ENST00000425912 695 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AC068135.1-201ENST00000446164 246 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MTND5P8-201ENST00000449817 1083 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AC015724.1-201ENST00000478577 156 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 RPL30P7-201ENST00000479312 323 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 HMGB1P36-201ENST00000487709 576 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 SNORA31.22-201ENST00000517204 135 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AP003066.2-201ENST00000529375 555 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 AC135803.1-201ENST00000608748 565 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MIR19B1-201ENST00000384829 87 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 MIR153-2-201ENST00000385225 87 ntBASIC0.22□□□□□ -2.37
CSPG4Q6UVK1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms