Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 H3F3AP1-201ENST00000559984 334 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 MIR3200-201ENST00000580767 85 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC008121.1-201ENST00000603244 268 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AL160281.1-201ENST00000605307 311 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC058791.1-201ENST00000608412 3198 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-658P-201ENST00000384606 106 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 SNORD73A-201ENST00000386062 65 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 U3.37-201ENST00000408528 213 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AL030996.1-201ENST00000411430 235 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AL354751.2-201ENST00000415471 210 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC098831.1-201ENST00000440661 216 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC006026.2-201ENST00000457376 180 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.653-201ENST00000459091 95 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC128713.1-201ENST00000471495 306 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 FCF1P8-201ENST00000510322 597 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC026782.1-201ENST00000512952 449 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 MIR5195-201ENST00000583555 115 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC018462.2-201ENST00000605375 395 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC124303.1-201ENST00000605703 360 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AL157817.1-201ENST00000614264 790 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC133104.2-201ENST00000615272 193 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC007742.2-201ENST00000618226 398 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 AC099654.10-201ENST00000640395 161 ntBASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.29□□□□□ -1.88
PTCHD3Q3KNS1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-596P-201ENST00000365395 98 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 MIR518D-201ENST00000385014 87 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.579-201ENST00000390939 94 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1050P-201ENST00000410388 107 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 MTCO2P12-201ENST00000427426 682 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC005300.1-201ENST00000428401 373 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 MTCYBP6-201ENST00000441810 138 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.639-201ENST00000458981 102 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC010401.1-201ENST00000463867 348 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.708-201ENST00000516950 96 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC104576.1-201ENST00000524225 88 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC093249.1-201ENST00000567049 203 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 CPDP1-201ENST00000579660 283 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AP000654.2-201ENST00000605633 586 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC008962.1-201ENST00000605729 304 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC019193.3-201ENST00000609144 554 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AL161629.2-201ENST00000615347 275 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC068831.7-201ENST00000616954 363 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 MIR6134-201ENST00000617606 109 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC090971.5-201ENST00000621102 293 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 AC017071.1-201ENST00000564407 2204 ntBASIC3.28□□□□□ -1.88
PTCHD3Q3KNS1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.28□□□□□ -1.89
PTCHD3Q3KNS1 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.28□□□□□ -1.89
PTCHD3Q3KNS1 AL049781.1-201ENST00000623195 3585 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.146-201ENST00000363549 102 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 SNORD42.2-201ENST00000365570 69 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 MIR483-201ENST00000385070 76 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 SNORA75.4-201ENST00000391278 119 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AL117339.3-201ENST00000418733 162 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC005326.1-201ENST00000429197 123 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 RPS15AP10-201ENST00000432472 382 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 HIGD1AP2-201ENST00000446367 280 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 SSXP4-201ENST00000451349 245 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 PCMTD1P1-201ENST00000455560 355 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 BTF3P15-201ENST00000455606 336 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 RNU7-187P-201ENST00000458985 68 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 RPS27AP10-201ENST00000496103 208 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 MTCYBP40-201ENST00000509390 1135 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC005741.1-201ENST00000511094 432 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 SNORA74D-201ENST00000516404 141 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.687-201ENST00000516558 91 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms