Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA1P49639 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXA1P49639 Z83843.1-201ENST00000604070 3685 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXA1P49639 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXA1P49639 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
HOXA1P49639 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA1P49639 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA1P49639 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA1P49639 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.65□□□□□ -1.98
HOXA1P49639 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.65□□□□□ -1.98
HOXA1P49639 Y_RNA.813-201ENST00000364639 102 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA1P49639 Y_RNA.394-201ENST00000383942 103 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 SNORA1.3-201ENST00000384676 136 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 RNU6-95P-201ENST00000384697 107 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 RN7SKP111-201ENST00000410349 271 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 RN7SKP220-201ENST00000410611 288 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXA1P49639 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXA1P49639 AC005300.1-201ENST00000428401 373 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AL627311.1-201ENST00000431514 115 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AL159987.2-201ENST00000432754 307 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 CYCSP32-201ENST00000440548 321 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AL359672.1-201ENST00000442302 409 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 AL031274.1-201ENST00000450334 232 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 Y_RNA.632-201ENST00000459189 102 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 RNU7-138P-201ENST00000459479 64 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AP004217.1-201ENST00000480579 346 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA1P49639 SEM1P1-201ENST00000506694 209 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AC104619.4-201ENST00000510773 249 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 RNU6-1213P-201ENST00000517075 94 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AC087854.1-201ENST00000519706 414 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXA1P49639 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 GLYCAM1-201ENST00000546596 285 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.65□□□□□ -1.99
HOXA1P49639 MIR4782-201ENST00000577987 79 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA1P49639 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA1P49639 AL022345.1-201ENST00000607292 135 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 AC011890.2-201ENST00000613393 294 ntBASIC2.65□□□□□ -1.99
HOXA1P49639 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA1P49639 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA1P49639 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXA1P49639 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
HOXA1P49639 AC233263.6-201ENST00000631132 1963 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RNA5SP515-201ENST00000364570 118 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXA1P49639 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA1P49639 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA1P49639 CYCSP4-201ENST00000429682 331 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 AC018644.1-201ENST00000429934 551 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 SNRPEP4-201ENST00000435815 279 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA1P49639 UBE2V1P7-201ENST00000446395 340 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 MTND1P17-201ENST00000448961 204 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RPL26P9-201ENST00000457466 433 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RNU7-187P-201ENST00000458985 68 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 AC130509.1-201ENST00000464158 433 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RPL23AP45-201ENST00000476406 468 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RPS27P27-201ENST00000498779 255 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RNU6-1153P-201ENST00000516760 105 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA1P49639 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA1P49639 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.64□□□□□ -1.99
HOXA1P49639 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXA1P49639 AC026371.1-201ENST00000551867 419 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 FRG2DP-202ENST00000566967 323 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA1P49639 MIR3670-2-201ENST00000582974 65 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 MIR3670-1-201ENST00000584160 65 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 MIR3670-3-201ENST00000584855 65 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 RPL12P50-201ENST00000603116 116 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 AC012468.1-201ENST00000604888 430 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 AL133255.1-201ENST00000606374 441 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 MIR3670-4-201ENST00000612260 65 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 MIR6128-201ENST00000615528 109 ntBASIC2.64□□□□□ -1.99
HOXA1P49639 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.64□□□□□ -1.99
HOXA1P49639 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA1P49639 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXA1P49639 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXA1P49639 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXA1P49639 RNU6-428P-201ENST00000362942 107 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 MIR200C-201ENST00000384980 68 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AL445529.1-201ENST00000398713 389 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 MIR888-201ENST00000401186 77 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 CYCSP19-201ENST00000411715 316 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 SNORD56-201ENST00000413522 71 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC092017.2-201ENST00000427600 362 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC098831.1-201ENST00000440661 216 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 NDUFB1P2-201ENST00000449477 176 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC107399.1-201ENST00000451226 265 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AP000705.1-201ENST00000454567 350 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms