Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 Z98742.2-201ENST00000431564 187 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC002486.1-201ENST00000435098 391 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC132479.1-201ENST00000449160 144 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AL583843.1-201ENST00000456070 346 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC107401.1-201ENST00000503426 685 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 FAM92A1P2-202ENST00000504766 877 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC092436.1-201ENST00000506450 503 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC108078.1-201ENST00000508073 725 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNA5SP112-201ENST00000515937 99 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 SCARNA3-201ENST00000517097 143 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 OR4R1P-201ENST00000529879 463 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RANP3-201ENST00000530970 276 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 MIR548AC-201ENST00000585049 88 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 AL021997.1-201ENST00000605757 193 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC008536.2-201ENST00000607284 349 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC007684.1-201ENST00000609671 477 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 U6.42-201ENST00000618440 107 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AL158209.2-201ENST00000619266 216 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 AC098679.4-201ENST00000624241 654 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 Z82195.2-201ENST00000612348 18351 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL109809.4-201ENST00000603520 2185 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
TNFRSF4P43489 MTND5P6-201ENST00000422338 1798 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
TNFRSF4P43489 RNU6-486P-201ENST00000363116 107 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 RNU6-61P-201ENST00000365528 109 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 MIR518D-201ENST00000385014 87 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 RNU6-220P-201ENST00000390919 107 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
TNFRSF4P43489 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL162578.1-201ENST00000406202 378 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 BX276092.3-201ENST00000424182 230 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 MTATP6P16-201ENST00000434543 526 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC004383.1-201ENST00000438135 289 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC096638.1-201ENST00000444678 216 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC090096.1-201ENST00000489168 390 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 RPL22P13-201ENST00000493291 347 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AIG1P1-201ENST00000503376 148 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC091133.4-201ENST00000511142 308 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 MTCYBP20-201ENST00000524239 1129 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 FAM92A1P1-201ENST00000528023 890 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 OR5AL2P-201ENST00000532185 920 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 DEFB131E-202ENST00000602581 683 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC087045.1-201ENST00000605856 382 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC084782.3-201ENST00000612282 578 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC009161.2-201ENST00000624626 138 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 CKAP2P1-201ENST00000555477 2049 ntBASIC2.37□□□□□ -2.03
TNFRSF4P43489 AC092881.1-201ENST00000638218 2733 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TNFRSF4P43489 OR56A5-201ENST00000340110 738 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 Y_RNA.1-201ENST00000352915 104 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 Y_RNA.41-201ENST00000362646 102 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 SNORA62.1-201ENST00000364287 154 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 SNORA75B-201ENST00000384053 137 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 Y_RNA.623-201ENST00000411128 95 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 RPL23AP20-201ENST00000447965 421 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 AC022364.2-201ENST00000457963 554 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.36□□□□□ -2.03
TNFRSF4P43489 AC022493.1-201ENST00000492984 337 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 HMGB1P29-201ENST00000505659 499 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 RPL37P25-201ENST00000507308 276 ntBASIC2.36□□□□□ -2.03
TNFRSF4P43489 RBBP4P6-201ENST00000508098 202 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms