Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX2P35548 AP003733.2-201ENST00000529409 171 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 AC023575.1-201ENST00000580510 358 ntBASIC3.61□□□□□ -1.83
MSX2P35548 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 SDR42E1P4-201ENST00000620894 481 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC068724.3-201ENST00000625906 87 ntBASIC3.61□□□□□ -1.83
MSX2P35548 U6.104-201ENST00000637979 90 ntBASIC3.61□□□□□ -1.83
MSX2P35548 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSX2P35548 AP000560.1-201ENST00000624150 1937 ntBASIC3.61□□□□□ -1.83
MSX2P35548 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSX2P35548 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSX2P35548 MAPK10-373ENST00000641983 6772 ntBASIC3.6□□□□□ -1.83
MSX2P35548 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.6□□□□□ -1.83
MSX2P35548 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
MSX2P35548 SNORD50.1-201ENST00000362987 71 ntBASIC3.6□□□□□ -1.83
MSX2P35548 Y_RNA.471-201ENST00000384312 102 ntBASIC3.6□□□□□ -1.83
MSX2P35548 MIR184-201ENST00000384962 84 ntBASIC3.6□□□□□ -1.83
MSX2P35548 SNORA69.1-201ENST00000390904 137 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AL022722.2-201ENST00000402519 180 ntBASIC3.6□□□□□ -1.83
MSX2P35548 ELOCP19-201ENST00000411919 318 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.6□□□□□ -1.83
MSX2P35548 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.6□□□□□ -1.83
MSX2P35548 AC007098.1-201ENST00000420122 367 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.6□□□□□ -1.83
MSX2P35548 MTND2P29-201ENST00000438595 412 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.6□□□□□ -1.83
MSX2P35548 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.6□□□□□ -1.83
MSX2P35548 AC010618.1-201ENST00000469924 477 ntBASIC3.6□□□□□ -1.83
MSX2P35548 RPL21P13-201ENST00000488305 481 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.6□□□□□ -1.83
MSX2P35548 AC026784.1-201ENST00000507986 352 ntBASIC3.6□□□□□ -1.83
MSX2P35548 RNU6-570P-201ENST00000517051 105 ntBASIC3.6□□□□□ -1.83
MSX2P35548 IGKV2-23-201ENST00000518729 323 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.6□□□□□ -1.83
MSX2P35548 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.6□□□□□ -1.83
MSX2P35548 YPEL5P3-201ENST00000547227 352 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.6□□□□□ -1.83
MSX2P35548 HSPE1P5-201ENST00000561489 272 ntBASIC3.6□□□□□ -1.83
MSX2P35548 MIR3921-201ENST00000577308 85 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC012433.1-201ENST00000588916 398 ntBASIC3.6□□□□□ -1.83
MSX2P35548 RPS29P30-201ENST00000600975 111 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AP002826.1-201ENST00000608835 315 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC009318.2-201ENST00000610917 651 ntBASIC3.6□□□□□ -1.83
MSX2P35548 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.6□□□□□ -1.83
MSX2P35548 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.6□□□□□ -1.83
MSX2P35548 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSX2P35548 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSX2P35548 MTND5P6-201ENST00000422338 1798 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSX2P35548 MIR383-201ENST00000362257 73 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RNA5SP366-201ENST00000365454 123 ntBASIC3.59□□□□□ -1.83
MSX2P35548 MIR628-201ENST00000385229 95 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RNU6-700P-201ENST00000391043 107 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RNA5SP494-201ENST00000410653 129 ntBASIC3.59□□□□□ -1.83
MSX2P35548 Y_RNA.623-201ENST00000411128 95 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RPL21P38-201ENST00000418090 167 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
MSX2P35548 NUTF2P7-201ENST00000453086 375 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC013470.1-201ENST00000453438 462 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC079354.2-201ENST00000453523 154 ntBASIC3.59□□□□□ -1.83
MSX2P35548 U8.21-201ENST00000459536 136 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC011276.1-201ENST00000469688 323 ntBASIC3.59□□□□□ -1.83
MSX2P35548 TRBVB-201ENST00000477100 408 ntBASIC3.59□□□□□ -1.83
MSX2P35548 PPIAP15-201ENST00000479662 484 ntBASIC3.59□□□□□ -1.83
MSX2P35548 RPL30P10-201ENST00000488148 337 ntBASIC3.59□□□□□ -1.83
MSX2P35548 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 HMGB3P17-201ENST00000504195 649 ntBASIC3.59□□□□□ -1.83
MSX2P35548 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 AL359273.1-201ENST00000510918 627 ntBASIC3.59□□□□□ -1.83
MSX2P35548 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.59□□□□□ -1.83
MSX2P35548 Y_RNA.673-201ENST00000516306 88 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.59□□□□□ -1.83
MSX2P35548 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 AC103996.1-201ENST00000555468 102 ntBASIC3.59□□□□□ -1.83
MSX2P35548 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX2P35548 RN7SL600P-201ENST00000581811 299 ntBASIC3.59□□□□□ -1.83
MSX2P35548 MIR3939-201ENST00000582614 106 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC008962.1-201ENST00000605729 304 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC004852.3-201ENST00000614131 326 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC114781.5-201ENST00000615297 108 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AL161629.2-201ENST00000615347 275 ntBASIC3.59□□□□□ -1.83
MSX2P35548 AC011944.2-201ENST00000624440 683 ntBASIC3.59□□□□□ -1.83
MSX2P35548 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
MSX2P35548 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSX2P35548 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSX2P35548 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.58□□□□□ -1.84
MSX2P35548 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.58□□□□□ -1.84
MSX2P35548 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX2P35548 U3.6-201ENST00000363622 211 ntBASIC3.58□□□□□ -1.84
MSX2P35548 Y_RNA.183-201ENST00000363882 113 ntBASIC3.58□□□□□ -1.84
MSX2P35548 Y_RNA.515-201ENST00000384535 112 ntBASIC3.58□□□□□ -1.84
MSX2P35548 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
MSX2P35548 SNORA57.3-201ENST00000411095 141 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.58□□□□□ -1.84
MSX2P35548 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms