Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC011742.1-201ENST00000431448 434 ntBASIC4.83□□□□□ -1.64
RFX1P22670 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.83□□□□□ -1.64
RFX1P22670 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.83□□□□□ -1.64
RFX1P22670 HMGB3P17-201ENST00000504195 649 ntBASIC4.83□□□□□ -1.64
RFX1P22670 RNU6-581P-201ENST00000516214 105 ntBASIC4.83□□□□□ -1.64
RFX1P22670 RNA5SP309-201ENST00000516670 106 ntBASIC4.83□□□□□ -1.64
RFX1P22670 RNU6-1198P-201ENST00000516904 67 ntBASIC4.83□□□□□ -1.64
RFX1P22670 RNU6-111P-201ENST00000517179 105 ntBASIC4.83□□□□□ -1.64
RFX1P22670 AC006199.1-201ENST00000548728 219 ntBASIC4.83□□□□□ -1.64
RFX1P22670 AC114781.5-201ENST00000615297 108 ntBASIC4.83□□□□□ -1.64
RFX1P22670 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.83□□□□□ -1.64
RFX1P22670 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX1P22670 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
RFX1P22670 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
RFX1P22670 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX1P22670 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RFX1P22670 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX1P22670 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
RFX1P22670 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RFX1P22670 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX1P22670 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.83□□□□□ -1.64
RFX1P22670 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 AC093908.1-201ENST00000623125 8092 ntBASIC4.82□□□□□ -1.64
RFX1P22670 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
RFX1P22670 AL391987.6-201ENST00000305671 199 ntBASIC4.82□□□□□ -1.64
RFX1P22670 SNORD81.1-201ENST00000363064 77 ntBASIC4.82□□□□□ -1.64
RFX1P22670 Y_RNA.237-201ENST00000364439 102 ntBASIC4.82□□□□□ -1.64
RFX1P22670 MIR544A-201ENST00000384855 91 ntBASIC4.82□□□□□ -1.64
RFX1P22670 AL079342.1-201ENST00000401460 267 ntBASIC4.82□□□□□ -1.64
RFX1P22670 RN7SKP167-201ENST00000411047 285 ntBASIC4.82□□□□□ -1.64
RFX1P22670 RPL23AP93-201ENST00000440847 484 ntBASIC4.82□□□□□ -1.64
RFX1P22670 RPS26P28-201ENST00000470806 348 ntBASIC4.82□□□□□ -1.64
RFX1P22670 RNU6-1114P-201ENST00000516022 107 ntBASIC4.82□□□□□ -1.64
RFX1P22670 AC034105.4-201ENST00000568304 277 ntBASIC4.82□□□□□ -1.64
RFX1P22670 MIR4429-201ENST00000580105 73 ntBASIC4.82□□□□□ -1.64
RFX1P22670 MIR4659A-201ENST00000580269 81 ntBASIC4.82□□□□□ -1.64
RFX1P22670 AL138721.1-201ENST00000616756 179 ntBASIC4.82□□□□□ -1.64
RFX1P22670 LINC00901.1-201ENST00000617252 152 ntBASIC4.82□□□□□ -1.64
RFX1P22670 AC002076.2-201ENST00000617362 122 ntBASIC4.82□□□□□ -1.64
RFX1P22670 MIR3199-2-201ENST00000636243 86 ntBASIC4.82□□□□□ -1.64
RFX1P22670 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
RFX1P22670 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.82□□□□□ -1.64
RFX1P22670 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
RFX1P22670 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
RFX1P22670 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.82□□□□□ -1.64
RFX1P22670 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RFX1P22670 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
RFX1P22670 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RFX1P22670 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.81□□□□□ -1.64
RFX1P22670 AC092268.1-201ENST00000342691 405 ntBASIC4.81□□□□□ -1.64
RFX1P22670 RNU1-140P-201ENST00000365040 165 ntBASIC4.81□□□□□ -1.64
RFX1P22670 AL356387.2-201ENST00000422272 243 ntBASIC4.81□□□□□ -1.64
RFX1P22670 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.81□□□□□ -1.64
RFX1P22670 AL714022.1-201ENST00000439897 151 ntBASIC4.81□□□□□ -1.64
RFX1P22670 RPS4XP22-201ENST00000480755 780 ntBASIC4.81□□□□□ -1.64
RFX1P22670 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.81□□□□□ -1.64
RFX1P22670 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.81□□□□□ -1.64
RFX1P22670 PARP4P3-201ENST00000510265 317 ntBASIC4.81□□□□□ -1.64
RFX1P22670 RNU5F-8P-201ENST00000515941 111 ntBASIC4.81□□□□□ -1.64
RFX1P22670 HSPE1P4-201ENST00000550617 308 ntBASIC4.81□□□□□ -1.64
RFX1P22670 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.81□□□□□ -1.64
RFX1P22670 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.81□□□□□ -1.64
RFX1P22670 MIR3138-201ENST00000585238 82 ntBASIC4.81□□□□□ -1.64
RFX1P22670 MIR7154-201ENST00000620673 73 ntBASIC4.81□□□□□ -1.64
RFX1P22670 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.81□□□□□ -1.64
RFX1P22670 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RFX1P22670 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RFX1P22670 AC018529.3-201ENST00000624212 2254 ntBASIC4.81□□□□□ -1.64
RFX1P22670 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.81□□□□□ -1.64
RFX1P22670 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
RFX1P22670 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RFX1P22670 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.8□□□□□ -1.64
RFX1P22670 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RFX1P22670 SNORD115-8-201ENST00000363856 82 ntBASIC4.8□□□□□ -1.64
RFX1P22670 SNORD115-38-201ENST00000365037 82 ntBASIC4.8□□□□□ -1.64
RFX1P22670 U8.10-201ENST00000384260 133 ntBASIC4.8□□□□□ -1.64
RFX1P22670 RNU6-622P-201ENST00000384272 103 ntBASIC4.8□□□□□ -1.64
RFX1P22670 MIR554-201ENST00000384874 96 ntBASIC4.8□□□□□ -1.64
RFX1P22670 PTMAP5-201ENST00000393073 333 ntBASIC4.8□□□□□ -1.64
RFX1P22670 MIR548I3-201ENST00000408378 149 ntBASIC4.8□□□□□ -1.64
RFX1P22670 MIR548I1-201ENST00000408810 149 ntBASIC4.8□□□□□ -1.64
RFX1P22670 AC005300.1-201ENST00000428401 373 ntBASIC4.8□□□□□ -1.64
RFX1P22670 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.8□□□□□ -1.64
RFX1P22670 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.8□□□□□ -1.64
RFX1P22670 AC012308.1-201ENST00000451232 178 ntBASIC4.8□□□□□ -1.64
RFX1P22670 SSXP4-201ENST00000451349 245 ntBASIC4.8□□□□□ -1.64
RFX1P22670 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.8□□□□□ -1.64
RFX1P22670 AC091167.1-201ENST00000492017 396 ntBASIC4.8□□□□□ -1.64
RFX1P22670 RN7SL810P-201ENST00000493031 276 ntBASIC4.8□□□□□ -1.64
RFX1P22670 SNORD19.2-201ENST00000516978 73 ntBASIC4.8□□□□□ -1.64
RFX1P22670 AC023632.4-201ENST00000517783 191 ntBASIC4.8□□□□□ -1.64
RFX1P22670 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms