Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXC11O43248 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC11O43248 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC11O43248 Z98742.2-201ENST00000431564 187 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC11O43248 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXC11O43248 AC004383.1-201ENST00000438135 289 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC11O43248 MTCO3P38-201ENST00000468910 766 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXC11O43248 AC091885.1-201ENST00000506658 268 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 RNU5B-3P-201ENST00000516601 115 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 SNORD60.2-201ENST00000516883 86 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC11O43248 GTF3AP2-201ENST00000557014 266 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 MTCO3P23-201ENST00000561363 289 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 MIR4672-201ENST00000583126 81 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 AC006023.1-201ENST00000603944 259 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 AC096772.1-201ENST00000609146 564 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 DISC2.1-201ENST00000612827 205 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
HOXC11O43248 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXC11O43248 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXC11O43248 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.02□□□□□ -1.93
HOXC11O43248 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
HOXC11O43248 AL109809.4-201ENST00000603520 2185 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC027514.1-201ENST00000588561 1603 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AL355596.1-201ENST00000565399 3996 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 U3.6-201ENST00000363622 211 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 SNORD116-20-201ENST00000384529 92 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AL513475.1-201ENST00000406602 315 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RNU6-648P-201ENST00000410190 107 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RNA5SP274-201ENST00000410484 108 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AF274854.1-201ENST00000413236 615 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 ARL5AP1-201ENST00000418991 388 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 MTCO1P20-201ENST00000425366 358 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC11O43248 AC105272.1-201ENST00000438604 198 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC11O43248 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC11O43248 AL121769.1-201ENST00000469473 401 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RN7SL499P-201ENST00000481141 276 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RPL36AP48-201ENST00000485521 314 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC11O43248 RNA5SP112-201ENST00000515937 99 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RPPH1-2P-201ENST00000516688 293 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC109635.3-201ENST00000529536 185 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AK6P1-201ENST00000540219 478 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 CR383656.8-201ENST00000549046 145 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC11O43248 TPRKBP2-201ENST00000565969 475 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC11O43248 MIR4424-201ENST00000585257 86 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC11O43248 AC024153.1-201ENST00000603103 365 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 RNU6-91P-201ENST00000607774 107 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC11O43248 MIR7157-201ENST00000635801 60 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC068137.3-201ENST00000639191 341 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AC073869.6-201ENST00000640656 341 ntBASIC3.01□□□□□ -1.93
HOXC11O43248 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXC11O43248 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC11O43248 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC11O43248 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
HOXC11O43248 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
HOXC11O43248 AL365361.1-201ENST00000566942 3481 ntBASIC3□□□□□ -1.93
HOXC11O43248 RNU6-942P-201ENST00000363002 107 ntBASIC3□□□□□ -1.93
HOXC11O43248 RNU4-12P-201ENST00000365233 139 ntBASIC3□□□□□ -1.93
HOXC11O43248 RNU1-109P-201ENST00000383960 147 ntBASIC3□□□□□ -1.93
HOXC11O43248 Y_RNA.573-201ENST00000384763 105 ntBASIC3□□□□□ -1.93
HOXC11O43248 RNA5SP219-201ENST00000390940 113 ntBASIC3□□□□□ -1.93
HOXC11O43248 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3□□□□□ -1.93
HOXC11O43248 BMS1P22-201ENST00000414726 313 ntBASIC3□□□□□ -1.93
HOXC11O43248 TRAPPC2P3-201ENST00000443200 321 ntBASIC3□□□□□ -1.93
HOXC11O43248 RPL21P99-201ENST00000480369 423 ntBASIC3□□□□□ -1.93
HOXC11O43248 VTRNA2-2P-201ENST00000516091 103 ntBASIC3□□□□□ -1.93
HOXC11O43248 SNORA43.2-201ENST00000516652 128 ntBASIC3□□□□□ -1.93
HOXC11O43248 RN7SKP40-201ENST00000517211 242 ntBASIC3□□□□□ -1.93
HOXC11O43248 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3□□□□□ -1.93
HOXC11O43248 AC136619.2-201ENST00000563361 631 ntBASIC3□□□□□ -1.93
HOXC11O43248 MIR3117-201ENST00000584034 78 ntBASIC3□□□□□ -1.93
HOXC11O43248 MIR3616-201ENST00000584070 92 ntBASIC3□□□□□ -1.93
HOXC11O43248 RPL12P50-201ENST00000603116 116 ntBASIC3□□□□□ -1.93
HOXC11O43248 AC002044.1-201ENST00000606707 158 ntBASIC3□□□□□ -1.93
HOXC11O43248 AC138627.2-201ENST00000624202 601 ntBASIC3□□□□□ -1.93
HOXC11O43248 Z69720.2-201ENST00000624755 279 ntBASIC3□□□□□ -1.93
HOXC11O43248 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3□□□□□ -1.93
HOXC11O43248 FER-210ENST00000628534 558 ntTSL 5 BASIC3□□□□□ -1.93
HOXC11O43248 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3□□□□□ -1.93
HOXC11O43248 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HOXC11O43248 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXC11O43248 HAUS6P2-201ENST00000433254 2404 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXC11O43248 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-37P-201ENST00000362692 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-82P-201ENST00000363970 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-461P-201ENST00000364195 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-266P-201ENST00000364225 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-11P-201ENST00000364234 107 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms