Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL031601.2-202ENST00000622650 282 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 ZNF680P1-201ENST00000436625 1469 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RNU6-212P-201ENST00000362642 104 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORD56.1-201ENST00000362913 68 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RNU1-72P-201ENST00000362976 153 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 Y_RNA.296-201ENST00000364930 108 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORD116-9-201ENST00000384000 95 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RNU6-622P-201ENST00000384272 103 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORD116-3-201ENST00000384287 95 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORD116-7-201ENST00000384404 95 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORD116-5-201ENST00000384462 95 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RNU2-3P-201ENST00000410144 191 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC073464.1-201ENST00000429823 534 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC124916.1-201ENST00000444020 547 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RPL39P40-201ENST00000445481 146 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 GMFBP1-201ENST00000467831 427 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RPS3AP17-201ENST00000472594 777 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 RPL23AP49-201ENST00000492925 468 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC092436.1-201ENST00000506450 503 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 SNORA31.23-201ENST00000517219 133 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC109329.1-201ENST00000518744 317 ntBASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
FOXA2Q9Y261 MTND4P14-201ENST00000435799 1354 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RNU6-78P-201ENST00000362897 107 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RNU6-527P-201ENST00000363425 104 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 Y_RNA.324-201ENST00000365165 102 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RNU6-393P-201ENST00000384475 107 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 MIR186-201ENST00000384988 86 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RNA5SP390-201ENST00000410191 113 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 CDK8P2-201ENST00000415020 547 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AL669831.1-202ENST00000428504 417 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AL139132.1-201ENST00000431587 344 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 GTF2IP13-201ENST00000438487 386 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 MRPL50P4-201ENST00000446432 475 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RPS29P26-201ENST00000477483 171 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 RPS3AP14-201ENST00000483907 780 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AP001025.1-201ENST00000486139 332 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 LRRC34P2-201ENST00000514850 553 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC090897.2-201ENST00000581715 130 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AL713866.2-201ENST00000603579 219 ntBASIC2.23□□□□□ -2.05
FOXA2Q9Y261 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA2Q9Y261 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ZNF271P-202ENST00000465539 1970 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU6-7-201ENST00000364784 107 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU6-8-201ENST00000365467 107 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 Y_RNA.359-201ENST00000365498 102 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU5A-6P-201ENST00000384136 116 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU6-434P-201ENST00000384376 107 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL139095.1-201ENST00000404326 391 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU2-29P-201ENST00000410423 189 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 CYCSP33-201ENST00000414485 327 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC008267.5-201ENST00000424928 265 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL591043.1-201ENST00000432461 424 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC009238.1-201ENST00000442165 424 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC009237.6-201ENST00000446969 424 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL118520.1-201ENST00000450770 291 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RNU7-63P-201ENST00000459054 62 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC068781.1-201ENST00000488231 618 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 MTCO3P9-201ENST00000506989 781 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 MTCO3P7-201ENST00000510008 774 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 HMGB3P3-201ENST00000510526 400 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms