Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU4-35P-201ENST00000362588 141 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-78P-201ENST00000362897 107 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-884P-201ENST00000363889 107 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 U8.8-201ENST00000365399 135 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU1-73P-201ENST00000383971 164 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1032P-201ENST00000384100 107 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 MIR3074-201ENST00000384885 81 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 MIR518D-201ENST00000385014 87 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNA5SP31-201ENST00000411144 127 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 HMGN2P30-201ENST00000423237 256 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AL353997.1-201ENST00000432936 108 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC011816.1-201ENST00000441346 546 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 HIGD1AP2-201ENST00000446367 280 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 MTATP6P7-201ENST00000453315 681 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNA5SP310-201ENST00000459084 116 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RN7SL594P-201ENST00000470590 287 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 FO393415.2-201ENST00000480085 343 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AK3P2-201ENST00000507976 429 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-928P-201ENST00000516876 104 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC109479.2-201ENST00000517842 174 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AMZ2P1-203ENST00000565833 850 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AC006157.1-201ENST00000611750 366 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 SCARNA4-202ENST00000625402 129 ntBASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
PCIF1Q9H4Z3 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MIR423-201ENST00000362201 94 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 Y_RNA.48-201ENST00000362710 103 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-270P-201ENST00000364131 105 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 RNU5E-7P-201ENST00000365290 117 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 SNORD17-201ENST00000390930 237 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 RPL26P27-201ENST00000414397 437 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MRPS18CP6-201ENST00000423587 223 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 SLC25A15P5-201ENST00000508033 253 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 CBX3P8-201ENST00000532412 525 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MIR4429-201ENST00000580105 73 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 U4.7-201ENST00000638126 106 ntBASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.79□□□□□ -1.8
PCIF1Q9H4Z3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 SRP72P2-201ENST00000344851 1979 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 Y_RNA.364-201ENST00000365532 101 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC117470.1-201ENST00000381974 330 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 Y_RNA.459-201ENST00000384251 102 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 RNU6-1035P-201ENST00000384477 107 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 MIR888-201ENST00000401186 77 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 MRPL42P3-201ENST00000401492 326 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AL591034.1-201ENST00000407447 340 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC098831.1-201ENST00000440661 216 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AL357552.1-201ENST00000445254 415 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 RPL37P4-201ENST00000448908 268 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 U8.21-201ENST00000459536 136 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 RPL9P32-201ENST00000464118 620 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC022447.4-201ENST00000504053 364 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 RNU1-61P-201ENST00000516107 151 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC007458.1-201ENST00000542812 373 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC005476.1-201ENST00000554427 397 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 SRGNP1-201ENST00000603392 451 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC012468.1-201ENST00000604888 430 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC018889.1-201ENST00000605372 397 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC008962.1-201ENST00000605729 304 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 U3.45-201ENST00000607547 219 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC005014.2-201ENST00000607795 599 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms