Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL158032.1-201ENST00000605401 106 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AC046143.2-201ENST00000609789 160 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 RMST_3.1-201ENST00000611651 109 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AL365204.3-201ENST00000612448 685 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AC012409.4-201ENST00000612923 249 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.69□□□□□ -1.98
USP28Q96RU2 MTND5P42-201ENST00000637720 498 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
USP28Q96RU2 AC135776.4-201ENST00000624300 1904 ntBASIC2.69□□□□□ -1.98
USP28Q96RU2 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.69□□□□□ -1.98
USP28Q96RU2 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.69□□□□□ -1.98
USP28Q96RU2 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.69□□□□□ -1.98
USP28Q96RU2 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.69□□□□□ -1.98
USP28Q96RU2 MTND5P17-201ENST00000418405 1603 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 RNU6-451P-201ENST00000362921 107 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 RNU6-512P-201ENST00000364438 103 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.68□□□□□ -1.98
USP28Q96RU2 RNU1-138P-201ENST00000384093 164 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USP28Q96RU2 SNORA11.1-201ENST00000408133 129 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC098614.2-201ENST00000426040 255 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC000111.3-201ENST00000433478 193 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.68□□□□□ -1.98
USP28Q96RU2 DDX3P2-201ENST00000446138 111 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 RNU6-261P-201ENST00000459506 102 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 GMFBP1-201ENST00000467831 427 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 RPS29P25-201ENST00000481709 171 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 MTAPP1-201ENST00000489154 819 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC104806.1-201ENST00000508720 308 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.68□□□□□ -1.98
USP28Q96RU2 RNU6-927P-201ENST00000516199 100 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 RNA5SP503-201ENST00000517047 117 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.68□□□□□ -1.98
USP28Q96RU2 SUB1P1-201ENST00000524415 382 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 SNORA59B-202ENST00000578183 701 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC090616.3-201ENST00000582184 217 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.68□□□□□ -1.98
USP28Q96RU2 AL355877.2-201ENST00000603670 358 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC098826.3-201ENST00000603823 466 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC022893.3-201ENST00000607665 437 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC104458.1-201ENST00000608243 463 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC024940.5-201ENST00000622889 474 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 AC007998.5-201ENST00000622938 237 ntBASIC2.68□□□□□ -1.98
USP28Q96RU2 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.68□□□□□ -1.98
USP28Q96RU2 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
USP28Q96RU2 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.67□□□□□ -1.98
USP28Q96RU2 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
USP28Q96RU2 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
USP28Q96RU2 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.67□□□□□ -1.98
USP28Q96RU2 UBE2L2-201ENST00000254302 429 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 RNU6-552P-201ENST00000362869 119 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 Y_RNA.255-201ENST00000364581 97 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 RNU4-20P-201ENST00000365601 151 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 RNU6-190P-201ENST00000384154 102 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 RNU6-903P-201ENST00000391270 109 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 CISD1P1-201ENST00000393907 327 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USP28Q96RU2 OR9R1P-201ENST00000412200 877 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.67□□□□□ -1.98
USP28Q96RU2 RPL30P16-201ENST00000419341 429 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC099548.1-201ENST00000421443 426 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.67□□□□□ -1.98
USP28Q96RU2 RPS15AP28-201ENST00000435088 386 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 HMGB1P31-201ENST00000437242 427 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC018634.1-201ENST00000437554 401 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 RPS15AP7-201ENST00000439294 405 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 MTND4P25-201ENST00000441039 533 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.67□□□□□ -1.98
USP28Q96RU2 DPPA3P1-201ENST00000448050 469 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.67□□□□□ -1.98
USP28Q96RU2 SUMO2P6-201ENST00000505273 288 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC113155.1-201ENST00000511141 769 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.67□□□□□ -1.98
USP28Q96RU2 AC087241.2-201ENST00000535801 324 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.67□□□□□ -1.98
USP28Q96RU2 HIF1AP1-201ENST00000553642 175 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.67□□□□□ -1.98
USP28Q96RU2 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.67□□□□□ -1.98
USP28Q96RU2 RPL12P50-201ENST00000603116 116 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AL162413.1-201ENST00000603198 110 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 AC104763.2-201ENST00000604179 382 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 FER-210ENST00000628534 558 ntTSL 5 BASIC2.67□□□□□ -1.98
USP28Q96RU2 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.67□□□□□ -1.98
USP28Q96RU2 AC024614.3-201ENST00000637860 256 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.67□□□□□ -1.98
USP28Q96RU2 AC007785.2-201ENST00000598627 1916 ntBASIC2.67□□□□□ -1.98
USP28Q96RU2 CKAP2P1-201ENST00000555477 2049 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 HSPA8P4-201ENST00000511877 1920 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AC103710.2-202ENST00000641454 2853 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 RNY3P3-201ENST00000363816 102 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 Y_RNA.481-201ENST00000384373 102 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms