Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-50P-201ENST00000362356 103 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 MIR605-201ENST00000385078 83 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 SNORD89-201ENST00000390981 114 ntBASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC-0.37□□□□□ -2.47
VPS13AQ96RL7 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 RNU6-952P-201ENST00000391164 108 ntBASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 ZNF863P-201ENST00000426746 417 ntBASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 MTND4LP12-201ENST00000448237 295 ntBASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 AC090953.1-201ENST00000604305 1092 ntBASIC-0.38□□□□□ -2.47
VPS13AQ96RL7 RNU6-152P-201ENST00000384037 107 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 RNA5SP468-201ENST00000516782 93 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 RNU4-12P-201ENST00000365233 139 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC010631.1-201ENST00000474150 156 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC008759.3-201ENST00000613300 508 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC040896.1-201ENST00000613819 479 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 FTX_2.1-201ENST00000618816 94 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 RNY4P27-201ENST00000363341 96 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC118273.2-201ENST00000532092 465 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 MIR4441-201ENST00000582623 100 ntBASIC-0.39□□□□□ -2.47
VPS13AQ96RL7 SNORA63D-201ENST00000364359 132 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 RNU6-1197P-201ENST00000391183 107 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 GAPDHP17-201ENST00000449858 1001 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 AC135999.1-201ENST00000478962 479 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 MGST1-215ENST00000540056 546 ntTSL 3 BASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 MIR19B1-201ENST00000384829 87 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 MRPS36P4-201ENST00000534436 298 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 AC090616.5-202ENST00000582111 297 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 AL133370.2-201ENST00000619934 439 ntBASIC-0.4□□□□□ -2.47
VPS13AQ96RL7 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC-0.41□□□□□ -2.47
VPS13AQ96RL7 AC104651.1-201ENST00000427559 735 ntBASIC-0.41□□□□□ -2.47
VPS13AQ96RL7 HMGB1P35-201ENST00000503360 598 ntBASIC-0.41□□□□□ -2.47
VPS13AQ96RL7 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.41□□□□□ -2.47
VPS13AQ96RL7 SNORA1.1-201ENST00000364671 133 ntBASIC-0.41□□□□□ -2.48
VPS13AQ96RL7 RNU6-10P-201ENST00000384036 107 ntBASIC-0.41□□□□□ -2.48
VPS13AQ96RL7 RNU6-15P-201ENST00000384534 107 ntBASIC-0.41□□□□□ -2.48
VPS13AQ96RL7 AC241520.1-201ENST00000422654 1099 ntBASIC-0.41□□□□□ -2.48
VPS13AQ96RL7 SDAD1P2-201ENST00000441308 2028 ntBASIC-0.41□□□□□ -2.48
VPS13AQ96RL7 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 RPS29P15-201ENST00000458329 171 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 SMARCE1P4-201ENST00000523647 241 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 AC123786.2-201ENST00000603459 275 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 RNU6-929P-201ENST00000384429 107 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 RNU6-1237P-201ENST00000384777 107 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 RPS15AP27-201ENST00000449183 343 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 RNU6-197P-201ENST00000516680 100 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 AL359212.1-201ENST00000556608 614 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 AC090079.2-201ENST00000575289 768 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 AL049737.1-201ENST00000413920 1403 ntBASIC-0.42□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC138623.1-201ENST00000418060 216 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 OR52A4P-202ENST00000481634 799 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 VBP1-203ENST00000535916 944 ntTSL 2 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 RNA5SP264-201ENST00000363115 107 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 RNU4-65P-201ENST00000410473 140 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AL606495.1-201ENST00000422100 813 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC023194.1-201ENST00000493084 308 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 RAB11AP2-201ENST00000545905 639 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC093023.1-201ENST00000547375 507 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC004009.2-201ENST00000623016 728 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AL391994.1-201ENST00000254724 282 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 MIR607-201ENST00000385241 96 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 RNU6-735P-201ENST00000410612 107 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AP001328.1-201ENST00000528550 176 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC104465.1-201ENST00000611365 139 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AL158163.2-201ENST00000619110 700 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 MIR6738-201ENST00000619620 64 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC138627.2-201ENST00000624202 601 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC092192.1-201ENST00000633154 1018 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 MIR1295B-201ENST00000636144 60 ntBASIC-0.43□□□□□ -2.48
VPS13AQ96RL7 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms