Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC113155.1-201ENST00000511141 769 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 RNU6-1183P-201ENST00000517054 60 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 MTND4P7-201ENST00000523876 130 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AL137161.1-201ENST00000532231 390 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AL355877.2-201ENST00000603670 358 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 AC007938.3-201ENST00000604965 623 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 ATP1B3P1-201ENST00000605365 821 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 ADAM3A-203ENST00000461344 2157 ntBASIC2.61□□□□□ -1.99
PDLIM3Q53GG5 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RNU6-898P-201ENST00000365627 104 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 MIR10A-201ENST00000385043 110 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RNU6-908P-201ENST00000410160 94 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC244505.4-201ENST00000434905 287 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 USP9YP28-201ENST00000435142 589 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RPS12P18-201ENST00000442381 270 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 SSXP5-201ENST00000443473 287 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AL078601.1-201ENST00000444542 271 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 WASF1P1-201ENST00000447560 1131 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 EEF1B2P7-201ENST00000451177 676 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 UQCRHP3-201ENST00000451503 251 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RNU7-180P-201ENST00000459240 63 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RN7SL283P-201ENST00000489055 303 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 CCDC34P1-201ENST00000507441 517 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC114786.4-201ENST00000508771 728 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AF213884.2-201ENST00000510417 903 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 RNU6-581P-201ENST00000516214 105 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 PSMA2P1-201ENST00000526365 646 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AP003465.2-201ENST00000602571 373 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 NRBF2P5-201ENST00000603087 788 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AL157817.1-201ENST00000614264 790 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AP001486.3-201ENST00000615334 372 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 uc_338.11-201ENST00000619132 160 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AP003400.5-201ENST00000624827 617 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 FER-210ENST00000628534 558 ntTSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 MIR3662-201ENST00000637030 95 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 AC093831.2-201ENST00000624393 3427 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.6□□□□□ -1.99
PDLIM3Q53GG5 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 RNU6-534P-201ENST00000364877 106 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 Y_RNA.373-201ENST00000365600 103 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 Y_RNA.573-201ENST00000384763 105 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 RNA5SP219-201ENST00000390940 113 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 SNORA16.2-201ENST00000390991 127 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 CIR1P3-201ENST00000405137 479 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 TOMM20P4-201ENST00000427861 435 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AL669831.1-202ENST00000428504 417 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 GTF2IP13-201ENST00000438487 386 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 PRPS1P1-201ENST00000445305 876 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC003071.1-201ENST00000451219 789 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 MTCO3P38-201ENST00000468910 766 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 RPL23AP70-201ENST00000483361 460 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 MTAPP1-201ENST00000489154 819 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 RNU1-86P-201ENST00000516108 154 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 RNU1-107P-201ENST00000516617 154 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AL118558.2-201ENST00000556294 238 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC092325.1-201ENST00000566449 554 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 DISC2.1-201ENST00000612827 205 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 ATP5A1P2-202ENST00000616464 443 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 U2.21-201ENST00000637295 81 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 AC024614.3-201ENST00000637860 256 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 OR4G1P-203ENST00000641984 1631 ntBASIC2.59□□□□□ -1.99
PDLIM3Q53GG5 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.59□□□□□ -2
PDLIM3Q53GG5 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.59□□□□□ -2
PDLIM3Q53GG5 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.58□□□□□ -2
PDLIM3Q53GG5 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC008264.2-201ENST00000610193 3731 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 Y_RNA.248-201ENST00000364501 109 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 SNORA51.4-201ENST00000364993 124 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 Y_RNA.378-201ENST00000365652 113 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 SNORA70B-201ENST00000384210 135 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 RNU6-166P-201ENST00000384371 107 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 SNORA40C-201ENST00000391285 128 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AL357075.1-201ENST00000404107 726 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 MIR1277-201ENST00000408536 78 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms