Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NDUFB4P7-201ENST00000423198 363 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 MTCO1P3-201ENST00000429327 192 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC112771.1-201ENST00000463581 102 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 HMGB1P35-201ENST00000503360 598 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU6-889P-201ENST00000517189 103 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 MTCYBP22-201ENST00000603788 447 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC004067.1-201ENST00000608733 700 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 ZNF849P-201ENST00000594711 1566 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 RNU6-1305P-201ENST00000364353 104 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 SNORD114-15-201ENST00000364687 72 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 MRPL35P1-201ENST00000404272 572 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AL589655.1-201ENST00000405398 482 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 RNA5SP266-201ENST00000410273 108 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 RNU6-564P-201ENST00000410983 104 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AP1S2P1-201ENST00000457344 379 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 RNA5SP57-201ENST00000459463 123 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC026271.5-201ENST00000577873 130 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC079610.2-201ENST00000604818 690 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC016925.2-201ENST00000605108 242 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC083875.1-201ENST00000419509 405 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC092393.1-201ENST00000439625 742 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC113420.1-201ENST00000507903 571 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 RNU6-1183P-201ENST00000517054 60 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 ADAM3B-201ENST00000569937 840 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC004805.2-201ENST00000605382 482 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 U2.21-201ENST00000637295 81 ntBASIC0.41□□□□□ -2.34
CHD9Q3L8U1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.41□□□□□ -2.34
CHD9Q3L8U1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 MIR218-1-201ENST00000384999 110 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 MIR29C-201ENST00000385231 88 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 MIR888-201ENST00000401186 77 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AL929288.2-201ENST00000446368 407 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 KATNBL1P6-201ENST00000453433 915 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC022483.1-201ENST00000514020 567 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC022616.2-201ENST00000523185 300 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC022254.1-201ENST00000567857 235 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AL022067.1-201ENST00000602426 454 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AP003973.1-201ENST00000604639 691 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC004853.1-201ENST00000604902 698 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AL590396.4-201ENST00000636779 956 ntBASIC0.4□□□□□ -2.34
CHD9Q3L8U1 AC121333.1-201ENST00000567488 2709 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 RNU6-891P-201ENST00000384280 111 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 TMSB4XP8-201ENST00000402089 135 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 TMSB4XP6-201ENST00000415187 135 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 AC060773.1-201ENST00000421698 310 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 TMSB4XP1-201ENST00000424567 135 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 AC092634.2-201ENST00000428146 1010 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 RPL39P28-201ENST00000465655 155 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 MZT1P2-201ENST00000604387 248 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 MIR6130-201ENST00000619419 109 ntBASIC0.4□□□□□ -2.35
CHD9Q3L8U1 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
CHD9Q3L8U1 HMGN2P39-201ENST00000398005 273 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 NDUFS5P1-201ENST00000405668 289 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC096920.1-201ENST00000423991 241 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC013828.1-201ENST00000481845 158 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC108729.1-201ENST00000487812 947 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC012065.4-201ENST00000602445 679 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC012676.2-201ENST00000619258 186 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL159972.1-201ENST00000625150 448 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 RNU6-152P-201ENST00000384037 107 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms