Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC067904.2-201ENST00000517322 1283 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AP003066.2-201ENST00000529375 555 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC125611.1-201ENST00000549563 229 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AL713866.2-201ENST00000603579 219 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC008498.1-201ENST00000613012 531 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 uc_338.6-201ENST00000613544 171 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC092192.1-201ENST00000633154 1018 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AL049641.1-201ENST00000441055 1948 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 SNORD49B-201ENST00000365172 72 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU2-43P-201ENST00000410306 190 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU2-15P-201ENST00000410692 191 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 TRIM60P5Y-201ENST00000413946 574 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RPS3AP37-201ENST00000419176 745 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL034418.1-201ENST00000448675 860 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 snoU13.28-201ENST00000459235 104 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC104629.2-201ENST00000468627 598 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RPL22P13-201ENST00000493291 347 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC008494.2-201ENST00000514544 370 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC104057.1-201ENST00000515547 497 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-1095P-201ENST00000516148 108 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-1183P-201ENST00000517054 60 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC141557.1-201ENST00000540982 400 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC009268.1-201ENST00000561352 1203 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC087481.2-201ENST00000565492 330 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 MIR3609-201ENST00000582661 80 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 SNORD39.3-201ENST00000584451 71 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 HSPE1P19-201ENST00000603327 295 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-91P-201ENST00000607774 107 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC021851.1-201ENST00000608537 1082 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC013468.1-201ENST00000608680 598 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL590240.4-201ENST00000616908 390 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC097372.4-201ENST00000625025 466 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC112487.2-201ENST00000637950 304 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU1-124P-201ENST00000363861 145 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU4-9P-201ENST00000364951 139 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-1104P-201ENST00000384723 104 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC013410.2-201ENST00000422627 201 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 ISCA1P1-201ENST00000426679 387 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 HMGN2P22-201ENST00000427588 175 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC093106.2-201ENST00000428212 385 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 RPL26P6-201ENST00000440913 438 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 ARPC3P5-201ENST00000448802 534 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 BUD31P2-201ENST00000449374 300 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 OFD1P3Y-201ENST00000453312 783 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
COL7A1Q02388 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL158211.1-201ENST00000566763 763 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC008121.1-201ENST00000603244 268 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC018638.7-201ENST00000605836 1114 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AP002826.1-201ENST00000608835 315 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC016252.1-201ENST00000609721 474 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL078604.3-201ENST00000615580 211 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC009269.6-201ENST00000621778 588 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AP003400.6-201ENST00000624698 740 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 SNORD115-3-201ENST00000363100 82 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 SNORA4.1-201ENST00000364263 144 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-152P-201ENST00000384037 107 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 SNORD51-201ENST00000384320 80 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-31P-201ENST00000384388 108 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RPL22P22-201ENST00000395439 379 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 CCNG1P1-201ENST00000406783 885 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 MIR1185-1-201ENST00000408598 86 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AL929288.2-201ENST00000446368 407 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 HSPE1P13-201ENST00000451143 297 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 RNU6-420P-201ENST00000458780 107 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC006512.1-201ENST00000468816 291 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.2□□□□□ -2.38
COL7A1Q02388 RN7SKP258-201ENST00000517151 304 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC008562.1-201ENST00000521763 330 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms