Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.3□□□□□ -1.72
LIG3P49916 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
LIG3P49916 MIR383-201ENST00000362257 73 ntBASIC4.3□□□□□ -1.72
LIG3P49916 RNU4-9P-201ENST00000364951 139 ntBASIC4.3□□□□□ -1.72
LIG3P49916 RNU6-708P-201ENST00000384217 107 ntBASIC4.3□□□□□ -1.72
LIG3P49916 RNA5SP36-201ENST00000410197 133 ntBASIC4.3□□□□□ -1.72
LIG3P49916 RNU6-1245P-201ENST00000411130 106 ntBASIC4.3□□□□□ -1.72
LIG3P49916 TMEM167AP1-201ENST00000423409 219 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AL157831.1-201ENST00000426134 473 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AC011742.1-201ENST00000431448 434 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AC098831.1-201ENST00000440661 216 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.3□□□□□ -1.72
LIG3P49916 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.3□□□□□ -1.72
LIG3P49916 AP003730.1-201ENST00000524605 285 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AP003733.2-201ENST00000529409 171 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AC007458.1-201ENST00000542812 373 ntBASIC4.3□□□□□ -1.72
LIG3P49916 AL442163.3-201ENST00000554110 156 ntBASIC4.3□□□□□ -1.72
LIG3P49916 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.3□□□□□ -1.72
LIG3P49916 AC097372.5-201ENST00000623665 376 ntBASIC4.3□□□□□ -1.72
LIG3P49916 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 AC241585.2-209ENST00000638217 143 ntBASIC4.3□□□□□ -1.72
LIG3P49916 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.3□□□□□ -1.72
LIG3P49916 AC233981.2-201ENST00000611524 1614 ntBASIC4.3□□□□□ -1.72
LIG3P49916 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.3□□□□□ -1.72
LIG3P49916 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.3□□□□□ -1.72
LIG3P49916 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
LIG3P49916 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
LIG3P49916 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.29□□□□□ -1.72
LIG3P49916 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIG3P49916 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.29□□□□□ -1.72
LIG3P49916 Y_RNA.14-201ENST00000362415 103 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNU1-14P-201ENST00000362759 152 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNU6-884P-201ENST00000363889 107 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNU6-968P-201ENST00000384076 107 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL21P75-201ENST00000396599 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL21P28-201ENST00000401418 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNU2-38P-201ENST00000410856 79 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AL590556.1-201ENST00000423231 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 ARL5AP4-201ENST00000430731 512 ntBASIC4.29□□□□□ -1.72
LIG3P49916 LINC01399-202ENST00000458450 244 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL21P11-201ENST00000461458 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL21P39-201ENST00000463605 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL23AP14-201ENST00000468281 468 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC087190.1-201ENST00000484462 480 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC107032.1-201ENST00000485945 480 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC132942.1-201ENST00000486753 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC093591.1-201ENST00000491435 481 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RPL21P16-201ENST00000495531 483 ntBASIC4.29□□□□□ -1.72
LIG3P49916 BTF3L4P4-201ENST00000506381 449 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNU2-58P-201ENST00000516403 183 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RNA5SP519-201ENST00000516480 119 ntBASIC4.29□□□□□ -1.72
LIG3P49916 MRPL49P2-201ENST00000521066 465 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.29□□□□□ -1.72
LIG3P49916 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.29□□□□□ -1.72
LIG3P49916 AC012468.1-201ENST00000604888 430 ntBASIC4.29□□□□□ -1.72
LIG3P49916 AC078938.1-201ENST00000620993 318 ntBASIC4.29□□□□□ -1.72
LIG3P49916 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.29□□□□□ -1.72
LIG3P49916 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.29□□□□□ -1.72
LIG3P49916 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LIG3P49916 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LIG3P49916 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
LIG3P49916 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LIG3P49916 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 RNU6-942P-201ENST00000363002 107 ntBASIC4.28□□□□□ -1.72
LIG3P49916 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.28□□□□□ -1.72
LIG3P49916 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.28□□□□□ -1.72
LIG3P49916 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LIG3P49916 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.28□□□□□ -1.72
LIG3P49916 YPEL5P1-201ENST00000419731 367 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.28□□□□□ -1.72
LIG3P49916 AL358453.1-201ENST00000422522 250 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.28□□□□□ -1.72
LIG3P49916 AC007389.2-201ENST00000434630 306 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 RPL23AP81-201ENST00000455252 467 ntBASIC4.28□□□□□ -1.72
LIG3P49916 TRBVB-201ENST00000477100 408 ntBASIC4.28□□□□□ -1.72
LIG3P49916 ANXA2P1-201ENST00000505539 926 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AC025465.3-201ENST00000510570 311 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AC067942.3-201ENST00000512025 362 ntBASIC4.28□□□□□ -1.72
LIG3P49916 RNA5SP73-201ENST00000516744 108 ntBASIC4.28□□□□□ -1.72
LIG3P49916 Y_RNA.713-201ENST00000517013 96 ntBASIC4.28□□□□□ -1.72
LIG3P49916 RNU6-570P-201ENST00000517051 105 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 AC020895.1-201ENST00000595362 272 ntBASIC4.28□□□□□ -1.72
LIG3P49916 AL355877.2-201ENST00000603670 358 ntBASIC4.28□□□□□ -1.72
LIG3P49916 FAM27D1-201ENST00000612308 341 ntBASIC4.28□□□□□ -1.72
LIG3P49916 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.28□□□□□ -1.72
LIG3P49916 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIG3P49916 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms