Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AP000787.2-201ENST00000604432 568 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AL022154.1-201ENST00000604698 785 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC012557.2-201ENST00000605919 418 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC126118.1-201ENST00000607744 628 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 OR5AK4P-201ENST00000635912 903 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC069528.2-201ENST00000624849 1991 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.41□□□□□ -2.02
TNFRSF4P43489 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
TNFRSF4P43489 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
TNFRSF4P43489 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
TNFRSF4P43489 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.4□□□□□ -2.02
TNFRSF4P43489 Y_RNA.22-201ENST00000362492 102 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 RNU6-179P-201ENST00000363350 107 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TNFRSF4P43489 RNU6-166P-201ENST00000384371 107 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 RNU6-748P-201ENST00000384648 107 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 SNORA26.7-201ENST00000391288 122 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 CISD1P1-201ENST00000393907 327 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 GSTA9P-201ENST00000406231 611 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 BTF3P7-201ENST00000407097 488 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 MTCO2P11-201ENST00000431069 680 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 MICF-203ENST00000432679 129 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 FABP5P14-201ENST00000437273 393 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 RPS12P2-201ENST00000439728 269 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC079781.2-201ENST00000446424 169 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 MTCYBP1-201ENST00000454315 1119 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 RPL23AP49-201ENST00000492925 468 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 MTND2P33-201ENST00000506452 1031 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC090572.1-201ENST00000519251 160 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC022880.1-201ENST00000534017 973 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 SNRPGP18-201ENST00000553000 214 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC026464.5-201ENST00000562497 722 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AL121992.2-201ENST00000606262 256 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 AC136475.10-201ENST00000620253 385 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.4□□□□□ -2.03
TNFRSF4P43489 MTND5P26-201ENST00000426018 1752 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TNFRSF4P43489 AL359854.1-201ENST00000614203 1594 ntBASIC2.4□□□□□ -2.03
TNFRSF4P43489 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 RNU6-1097P-201ENST00000363586 107 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 RNU1-91P-201ENST00000364746 163 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL160275.3-201ENST00000423876 471 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC009969.1-201ENST00000438726 172 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AP001324.2-201ENST00000461163 319 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC079382.1-201ENST00000493346 557 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC116562.3-201ENST00000506136 177 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 RNU6-237P-201ENST00000515985 71 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 ACA59.2-201ENST00000517061 156 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC068587.5-201ENST00000528506 175 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 MIR5007-201ENST00000583098 95 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL158827.2-201ENST00000602494 330 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC008121.1-201ENST00000603244 268 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL645944.1-201ENST00000603857 493 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC067747.1-201ENST00000608026 250 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL449363.1-201ENST00000617815 186 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL157786.1-207ENST00000627771 695 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC084035.1-201ENST00000634543 607 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 AL691447.3-201ENST00000635020 330 ntBASIC2.39□□□□□ -2.03
TNFRSF4P43489 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
TNFRSF4P43489 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.39□□□□□ -2.03
TNFRSF4P43489 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TNFRSF4P43489 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 MIR412-201ENST00000362142 91 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 Y_RNA.367-201ENST00000365544 101 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNU6-108P-201ENST00000365558 107 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 MIR1-2-201ENST00000384961 85 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 MIR218-1-201ENST00000384999 110 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
TNFRSF4P43489 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNU2-9P-201ENST00000410194 145 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNU4-55P-201ENST00000410731 137 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RN7SKP123-201ENST00000410732 291 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNU6-387P-201ENST00000411331 105 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 RNA5SP111-201ENST00000411386 101 ntBASIC2.38□□□□□ -2.03
TNFRSF4P43489 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
TNFRSF4P43489 SDCBPP3-201ENST00000419629 891 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms