Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL359693.1-201ENST00000614959 2407 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.67□□□□□ -1.82
SMARCA1P28370 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
SMARCA1P28370 ZNF519P1-201ENST00000449011 1626 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SMARCA1P28370 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SMARCA1P28370 FAM35CP-201ENST00000554755 2470 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.66□□□□□ -1.82
SMARCA1P28370 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SMARCA1P28370 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SMARCA1P28370 RNU1-101P-201ENST00000391171 127 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.66□□□□□ -1.82
SMARCA1P28370 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.66□□□□□ -1.82
SMARCA1P28370 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.66□□□□□ -1.82
SMARCA1P28370 RPL7P37-201ENST00000425095 738 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 RPL21P40-201ENST00000428586 483 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.66□□□□□ -1.82
SMARCA1P28370 MTND1P17-201ENST00000448961 204 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC115115.1-201ENST00000449927 248 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 Y_RNA.632-201ENST00000459189 102 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC091179.1-201ENST00000461606 579 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.66□□□□□ -1.82
SMARCA1P28370 RPS4XP22-201ENST00000480755 780 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.66□□□□□ -1.82
SMARCA1P28370 AC011005.2-201ENST00000487324 359 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC008526.1-201ENST00000509149 338 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AP005639.2-201ENST00000527592 928 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AP000889.1-201ENST00000530968 660 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.66□□□□□ -1.82
SMARCA1P28370 AC138761.3-201ENST00000579993 334 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC012493.2-201ENST00000595083 291 ntBASIC3.66□□□□□ -1.82
SMARCA1P28370 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.66□□□□□ -1.82
SMARCA1P28370 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.66□□□□□ -1.82
SMARCA1P28370 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
SMARCA1P28370 Y_RNA.324-201ENST00000365165 102 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
SMARCA1P28370 Y_RNA.387-201ENST00000383918 102 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 Y_RNA.419-201ENST00000384041 102 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 RNU6-217P-201ENST00000384164 104 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 MIR483-201ENST00000385070 76 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC074085.1-201ENST00000413598 418 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.65□□□□□ -1.83
SMARCA1P28370 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.65□□□□□ -1.83
SMARCA1P28370 AL583843.1-201ENST00000456070 346 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 MIR892C-201ENST00000516410 77 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 SCARNA13-201ENST00000516672 275 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 RNU6-928P-201ENST00000516876 104 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC087854.1-201ENST00000519706 414 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.65□□□□□ -1.83
SMARCA1P28370 MIR4790-201ENST00000577799 79 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 APOOP1-201ENST00000604695 592 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AL353621.2-201ENST00000605340 133 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 FTX_3.1-201ENST00000610451 147 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC099506.2-201ENST00000623074 221 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AL359757.2-201ENST00000624309 274 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC091903.1-201ENST00000624322 454 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.65□□□□□ -1.83
SMARCA1P28370 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.65□□□□□ -1.83
SMARCA1P28370 AC233263.6-201ENST00000631132 1963 ntBASIC3.65□□□□□ -1.83
SMARCA1P28370 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
SMARCA1P28370 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
SMARCA1P28370 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
SMARCA1P28370 MIR412-201ENST00000362142 91 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 RNU6-270P-201ENST00000364131 105 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 Y_RNA.384-201ENST00000383909 102 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SMARCA1P28370 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SMARCA1P28370 SNORA40C-201ENST00000391285 128 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 RPS20P15-201ENST00000412792 311 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SMARCA1P28370 AL590632.1-201ENST00000424289 371 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 SKA2P1-201ENST00000425592 390 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 HMGB1P9-201ENST00000429856 646 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 FABP5P14-201ENST00000437273 393 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.64□□□□□ -1.83
SMARCA1P28370 AC010099.1-201ENST00000455434 375 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.64□□□□□ -1.83
SMARCA1P28370 HMGB1P30-201ENST00000492455 606 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 RNU1-143P-201ENST00000516296 146 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 SNORA74D-201ENST00000516404 141 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 SNORA31.19-201ENST00000517079 126 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 RN7SKP57-201ENST00000517248 293 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 AP005597.4-201ENST00000526762 229 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SMARCA1P28370 AC025423.5-201ENST00000550230 219 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.64□□□□□ -1.83
SMARCA1P28370 FRG2DP-202ENST00000566967 323 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.64□□□□□ -1.83
SMARCA1P28370 NUTF2P8-201ENST00000604593 363 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 U1.23-201ENST00000610293 146 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 RNU1-68P-201ENST00000615382 146 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 U1.39-201ENST00000621562 146 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 AC090574.1-201ENST00000623186 233 ntBASIC3.64□□□□□ -1.83
SMARCA1P28370 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.63□□□□□ -1.83
SMARCA1P28370 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 RNU6-562P-201ENST00000362731 107 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RNA5SP383-201ENST00000362934 120 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 SNORD14B-201ENST00000364533 90 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms