Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL359672.1-201ENST00000442302 409 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD9P28356 RNA5SP341-201ENST00000516261 117 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RNU1-143P-201ENST00000516296 146 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RNU6-1332P-201ENST00000516666 104 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.25□□□□□ -1.89
HOXD9P28356 IGKV2-23-201ENST00000518729 323 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RNU6-988P-201ENST00000519081 107 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RNU6-323P-201ENST00000521915 107 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD9P28356 MIR5692A1-201ENST00000580523 69 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD9P28356 UBL5P2-201ENST00000583788 219 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AC136443.5-201ENST00000603741 370 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AC008962.1-201ENST00000605729 304 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 U1.23-201ENST00000610293 146 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RNU1-68P-201ENST00000615382 146 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 U7.8-201ENST00000619968 63 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 U1.39-201ENST00000621562 146 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AL669831.3-213ENST00000636676 183 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD9P28356 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HOXD9P28356 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD9P28356 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
HOXD9P28356 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
HOXD9P28356 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD9P28356 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD9P28356 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD9P28356 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD9P28356 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD9P28356 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
HOXD9P28356 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD9P28356 Y_RNA.5-201ENST00000362334 102 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 MIR591-201ENST00000385290 95 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 NDUFB4P4-201ENST00000404822 243 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 MIR1290-201ENST00000408735 78 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 Y_RNA.646-201ENST00000410980 101 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AC018865.2-201ENST00000423631 129 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD9P28356 AL645568.3-201ENST00000433683 316 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 HIGD1AP11-201ENST00000438361 280 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 MTND3P2-201ENST00000438452 342 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD9P28356 AC104472.2-201ENST00000469035 601 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD9P28356 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXD9P28356 AC026371.1-201ENST00000551867 419 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXD9P28356 MIR4474-201ENST00000579189 78 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AC011471.1-201ENST00000585766 187 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AC008737.2-201ENST00000599446 118 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 MIR6128-201ENST00000615528 109 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AC002076.2-201ENST00000617362 122 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD9P28356 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD9P28356 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
HOXD9P28356 CUL1P1-201ENST00000509510 2425 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD9P28356 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
HOXD9P28356 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD9P28356 AC008568.2-201ENST00000623862 2313 ntBASIC3.24□□□□□ -1.89
HOXD9P28356 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD9P28356 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD9P28356 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD9P28356 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HOXD9P28356 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD9P28356 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD9P28356 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD9P28356 MIR422A-201ENST00000362286 90 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 RNU6-1115P-201ENST00000362490 106 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC117470.1-201ENST00000381974 330 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 RNU6-1040P-201ENST00000383974 107 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 SNORA75B-201ENST00000384053 137 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 RNU6-214P-201ENST00000384130 107 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 RNU6-95P-201ENST00000384697 107 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD9P28356 RPL21P90-201ENST00000415692 466 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 TMEM167AP1-201ENST00000423409 219 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD9P28356 HMGN2P20-201ENST00000437531 273 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AL360271.2-201ENST00000447710 161 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC006539.3-201ENST00000454258 129 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 SNORD5.1-201ENST00000458800 75 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 S100A11P2-201ENST00000467589 312 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXD9P28356 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD9P28356 AC026782.1-201ENST00000512952 449 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC104027.1-201ENST00000521887 300 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD9P28356 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXD9P28356 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD9P28356 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXD9P28356 AC073539.2-201ENST00000597113 165 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC018462.2-201ENST00000605375 395 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AL162274.2-201ENST00000614406 332 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC091903.1-201ENST00000624322 454 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 AC091152.2-201ENST00000591628 2569 ntBASIC3.23□□□□□ -1.89
HOXD9P28356 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD9P28356 MTND5P16-201ENST00000460269 1703 ntBASIC3.22□□□□□ -1.89
HOXD9P28356 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms