Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4BO75351 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4BO75351 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4BO75351 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4BO75351 Y_RNA.146-201ENST00000363549 102 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 Y_RNA.197-201ENST00000364004 102 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 SNORA38.1-201ENST00000364172 131 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RNU6-310P-201ENST00000384655 107 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 SNORA48.2-201ENST00000390926 124 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 MIR548P-201ENST00000408336 84 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RPL31P12-201ENST00000422587 358 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS4BO75351 MRPS31P2-201ENST00000451581 518 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 MTCO3P10-201ENST00000455912 772 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC092798.1-201ENST00000458542 409 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RPL21P10-201ENST00000463521 490 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC010401.1-201ENST00000463867 348 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RPL23AP14-201ENST00000468281 468 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RN7SL807P-201ENST00000470923 297 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 RPS4XP22-201ENST00000480755 780 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC093303.1-201ENST00000514549 295 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4BO75351 AC026333.2-201ENST00000542164 106 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4BO75351 AMZ2P1-203ENST00000565833 850 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS4BO75351 AL157817.1-201ENST00000614264 790 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 AL669831.3-213ENST00000636676 183 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4BO75351 ZNF807-201ENST00000328088 1707 ntBASIC3.46□□□□□ -1.86
VPS4BO75351 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4BO75351 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4BO75351 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
VPS4BO75351 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
VPS4BO75351 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4BO75351 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4BO75351 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4BO75351 MTND5P10-201ENST00000603719 1809 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RNU1-75P-201ENST00000347264 129 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RNU6-778P-201ENST00000363269 103 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 SNORD73A-201ENST00000386062 65 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS4BO75351 SNORA75.4-201ENST00000391278 119 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4BO75351 Y_RNA.646-201ENST00000410980 101 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RNU6-293P-201ENST00000411259 106 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 SNORD56-201ENST00000413522 71 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 Z99755.1-201ENST00000414048 380 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS4BO75351 Z82205.1-201ENST00000428456 297 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC097713.2-201ENST00000430199 356 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC092573.2-201ENST00000434546 243 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AL078601.1-201ENST00000444542 271 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 MTATP6P7-201ENST00000453315 681 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 Y_RNA.631-201ENST00000459607 101 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RPL23AP67-201ENST00000465341 474 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS4BO75351 AC097473.1-201ENST00000508142 408 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS4BO75351 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RNU6-572P-201ENST00000516724 80 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 Y_RNA.708-201ENST00000516950 96 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 RNU1-54P-201ENST00000517181 120 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4BO75351 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4BO75351 ELOCP31-201ENST00000540463 467 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC011602.1-201ENST00000546484 331 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS4BO75351 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS4BO75351 MIR3171-201ENST00000584270 74 ntBASIC3.45□□□□□ -1.86
VPS4BO75351 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4BO75351 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
VPS4BO75351 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4BO75351 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4BO75351 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4BO75351 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
VPS4BO75351 MIR30E-201ENST00000362104 92 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 MIR369-201ENST00000362155 70 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 Y_RNA.500-201ENST00000384466 111 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4BO75351 Y_RNA.594-201ENST00000410373 140 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 RNU6-1050P-201ENST00000410388 107 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 RNU6-1304P-201ENST00000411374 106 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 RPS15AP6-201ENST00000420703 385 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS4BO75351 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 RNU7-187P-201ENST00000458985 68 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 Y_RNA.670-201ENST00000516255 105 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS4BO75351 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS4BO75351 HMGB1P14-201ENST00000557424 591 ntBASIC3.44□□□□□ -1.86
VPS4BO75351 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4BO75351 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS4BO75351 MTND5P19-201ENST00000424872 1794 ntBASIC3.43□□□□□ -1.86
VPS4BO75351 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms