Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNU6-780P-201ENST00000391030 104 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 MIR887-201ENST00000401258 79 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RNU2-3P-201ENST00000410144 191 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RNA5SP344-201ENST00000411081 104 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 BX682237.1-201ENST00000415016 335 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RPL32P35-201ENST00000415214 394 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 USP9YP27-201ENST00000418455 438 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC11O43248 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC11O43248 RN7SL75P-201ENST00000461926 281 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 UBE2DNL-203ENST00000474922 222 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC11O43248 RN7SL20P-201ENST00000488827 297 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC11O43248 SNORA31.18-201ENST00000517043 134 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC11O43248 AL157687.1-201ENST00000554853 619 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC11O43248 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC11O43248 AC009163.5-201ENST00000575421 637 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 MIR4513-201ENST00000581077 86 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 MIR4765-201ENST00000585007 77 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC11O43248 U4.5-201ENST00000617137 123 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC11O43248 AP003400.5-201ENST00000624827 617 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 AC010329.5-201ENST00000623497 2174 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC11O43248 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
HOXC11O43248 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC11O43248 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXC11O43248 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXC11O43248 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
HOXC11O43248 Y_RNA.6-201ENST00000362350 114 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 SNORA51.4-201ENST00000364993 124 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 CYCSP33-201ENST00000414485 327 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC11O43248 FABP5P14-201ENST00000437273 393 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AL121601.2-201ENST00000438019 707 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 CALM1P1-201ENST00000442082 433 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC11O43248 RNU7-167P-201ENST00000459160 62 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RPL23AP70-201ENST00000483361 460 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RPL22P13-201ENST00000493291 347 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC11O43248 AC091826.1-201ENST00000514065 313 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RNA5SP367-201ENST00000516557 118 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RNU6-835P-201ENST00000516974 104 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AC069113.1-201ENST00000517763 267 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 BTF3P12-201ENST00000519620 469 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RPL7P20-201ENST00000520308 745 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AC007536.1-201ENST00000533382 349 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC11O43248 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC11O43248 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC11O43248 MIR5583-1-201ENST00000580941 59 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 ELOCP29-201ENST00000588193 334 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC11O43248 AC008121.1-201ENST00000603244 268 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 RPL23AP88-201ENST00000605759 454 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 MIR3529-201ENST00000637713 78 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 AL359854.1-201ENST00000614203 1594 ntBASIC3.04□□□□□ -1.92
HOXC11O43248 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC11O43248 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC11O43248 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC11O43248 RNU6-1303P-201ENST00000364841 107 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 RNU5E-7P-201ENST00000365290 117 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC11O43248 CIR1P3-201ENST00000405137 479 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 BTF3P7-201ENST00000407097 488 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC11O43248 MTCO1P21-201ENST00000416634 589 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AL139281.1-201ENST00000422120 335 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC11O43248 HMGB1P31-201ENST00000437242 427 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 RPS15AP7-201ENST00000439294 405 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC11O43248 AP001324.2-201ENST00000461163 319 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 MED28P2-201ENST00000475771 317 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 HIGD1AP13-201ENST00000509878 289 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC11O43248 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC11O43248 SCGB1D5P-201ENST00000515134 247 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 RNA5SP356-201ENST00000515972 94 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 SNORA31.6-201ENST00000516241 130 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC11O43248 OR1M4P-201ENST00000589199 287 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 NRBF2P5-201ENST00000603087 788 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AC010378.1-201ENST00000619270 362 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AC007318.2-201ENST00000620999 243 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 YWHAEP7-203ENST00000622054 312 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC11O43248 MIR1321-201ENST00000637766 79 ntBASIC3.03□□□□□ -1.92
HOXC11O43248 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
HOXC11O43248 SNORA9.2-201ENST00000365361 133 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 Y_RNA.402-201ENST00000383972 102 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 RNU6-192P-201ENST00000391253 100 ntBASIC3.02□□□□□ -1.93
HOXC11O43248 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC11O43248 RPL19P1-201ENST00000411635 428 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms