Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MTND5P25-201ENST00000430499 799 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 RPS25P9-201ENST00000435591 252 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.04□□□□□ -2.24
SDCBPO00560 PAXBP1P1-201ENST00000449315 447 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC004223.1-201ENST00000479840 271 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.04□□□□□ -2.24
SDCBPO00560 FAM206BP-201ENST00000510179 541 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.04□□□□□ -2.24
SDCBPO00560 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.04□□□□□ -2.24
SDCBPO00560 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.04□□□□□ -2.24
SDCBPO00560 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.04□□□□□ -2.24
SDCBPO00560 MIR3198-2-201ENST00000577868 80 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 BNIP3P26-201ENST00000600827 554 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC087045.1-201ENST00000605856 382 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 AC098614.4-201ENST00000607601 462 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 RNU6-91P-201ENST00000607774 107 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 Z82243.1-201ENST00000609432 473 ntBASIC1.04□□□□□ -2.24
SDCBPO00560 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SDCBPO00560 RNU6-1284P-201ENST00000363701 100 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 RNU6-560P-201ENST00000364007 108 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 SNORA4.3-201ENST00000365564 137 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 RNU6-1274P-201ENST00000384557 107 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 Y_RNA.534-201ENST00000384599 112 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 SNORA40.6-201ENST00000391153 128 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 RPS12P24-201ENST00000412619 387 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.03□□□□□ -2.24
SDCBPO00560 AC016831.2-201ENST00000417179 352 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 UBE2V1P4-201ENST00000425374 344 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.03□□□□□ -2.24
SDCBPO00560 PTENP1-201ENST00000447117 1215 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC1.03□□□□□ -2.24
SDCBPO00560 BTF3P15-201ENST00000455606 336 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 PRELID3BP1-201ENST00000457142 540 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 MTND1P16-201ENST00000465177 898 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 RPL39P36-201ENST00000490784 156 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.03□□□□□ -2.24
SDCBPO00560 RN7SKP219-201ENST00000516825 296 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 RNU6-586P-201ENST00000517265 104 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.03□□□□□ -2.24
SDCBPO00560 AP005660.1-201ENST00000522972 293 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 COPS8P3-201ENST00000526024 482 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AP003392.2-201ENST00000527269 208 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.03□□□□□ -2.24
SDCBPO00560 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.03□□□□□ -2.24
SDCBPO00560 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.03□□□□□ -2.24
SDCBPO00560 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.03□□□□□ -2.24
SDCBPO00560 BNIP3P27-201ENST00000599991 412 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
SDCBPO00560 AC245297.2-201ENST00000610119 565 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AL355472.4-201ENST00000610233 626 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AC018926.1-201ENST00000616335 435 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AL132822.1-201ENST00000617063 513 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AL121895.2-201ENST00000619558 447 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 AC009269.6-201ENST00000621778 588 ntBASIC1.03□□□□□ -2.24
SDCBPO00560 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.03□□□□□ -2.24
SDCBPO00560 RBBP8P1-201ENST00000449447 1844 ntBASIC1.03□□□□□ -2.25
SDCBPO00560 RNU5E-1-201ENST00000362477 120 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 SNORA7.1-201ENST00000363750 139 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 RNA5SP99-201ENST00000364020 114 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SDCBPO00560 MIR186-201ENST00000384988 86 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 MIR30A-201ENST00000385092 71 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
SDCBPO00560 RNU6-298P-201ENST00000390888 96 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 RNA5SP465-201ENST00000391195 109 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.02□□□□□ -2.25
SDCBPO00560 USP9YP33-201ENST00000412220 421 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.02□□□□□ -2.25
SDCBPO00560 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.02□□□□□ -2.25
SDCBPO00560 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 USP9YP35-201ENST00000435696 412 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 HMGB1P31-201ENST00000437242 427 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 NEFMP1-201ENST00000443423 1006 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC108729.1-201ENST00000487812 947 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.02□□□□□ -2.25
SDCBPO00560 AC079395.1-201ENST00000510981 262 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SDCBPO00560 MTCYBP43-201ENST00000513621 740 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.02□□□□□ -2.25
SDCBPO00560 RNU2-53P-201ENST00000516257 147 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 DEFB108A-201ENST00000530110 222 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AP000763.2-201ENST00000540641 163 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.02□□□□□ -2.25
SDCBPO00560 AC092125.1-201ENST00000562568 1995 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.02□□□□□ -2.25
SDCBPO00560 AC068620.3-201ENST00000602749 560 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC004987.4-201ENST00000603383 338 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 BNIP3P9-201ENST00000603714 553 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.02□□□□□ -2.25
SDCBPO00560 AC012360.2-201ENST00000609349 391 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC093788.1-201ENST00000609356 927 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.02□□□□□ -2.25
SDCBPO00560 AC092574.1-201ENST00000609771 420 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AC004908.3-201ENST00000610248 625 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AP000560.1-201ENST00000624150 1937 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 AL512643.1-201ENST00000635735 524 ntBASIC1.02□□□□□ -2.25
SDCBPO00560 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
SDCBPO00560 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SDCBPO00560 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms