Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 Y_RNA.1-201ENST00000352915 104 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1120P-201ENST00000362988 108 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1083P-201ENST00000384022 107 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 RNU4-55P-201ENST00000410731 137 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 USP9YP6-201ENST00000413550 854 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 OR6C66P-201ENST00000414917 930 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC009963.1-201ENST00000417265 157 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 MORF4L1P6-201ENST00000418771 268 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AL078601.1-201ENST00000444542 271 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AL360271.2-201ENST00000447710 161 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AL583843.1-201ENST00000456070 346 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC006512.1-201ENST00000468816 291 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 TRBV1-201ENST00000476502 284 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC079382.1-201ENST00000493346 557 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 FAM92A1P2-202ENST00000504766 877 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 RPL37P25-201ENST00000507308 276 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC010493.1-201ENST00000513479 292 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 SCARNA17.1-201ENST00000516211 143 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 SCARNA17.2-201ENST00000516334 143 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 SNORD19.2-201ENST00000516978 73 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP503-201ENST00000517047 117 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 CKS1BP7-201ENST00000522230 235 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC027176.1-201ENST00000560204 514 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 MIR4782-201ENST00000577987 79 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 MIR5092-201ENST00000583139 88 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 MIR548AC-201ENST00000585049 88 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC005261.5-201ENST00000596280 355 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC007684.1-201ENST00000609671 477 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 SCARNA17.4-201ENST00000614296 143 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 U4.3-201ENST00000621047 82 ntBASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
CPSF3Q9UKF6 AC010889.1-201ENST00000566193 2666 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 RNU6-623P-201ENST00000363143 105 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP456-201ENST00000364002 114 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 RNU6-371P-201ENST00000364283 108 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 RNU6-116P-201ENST00000384042 109 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MIR518D-201ENST00000385014 87 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MICF-203ENST00000432679 129 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL596276.1-201ENST00000434465 418 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL118520.1-201ENST00000450770 291 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC003071.1-201ENST00000451219 789 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 ADAM3A-203ENST00000461344 2157 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AIG1P1-201ENST00000503376 148 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC092436.1-201ENST00000506450 503 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC007151.1-201ENST00000572774 483 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MIR4703-201ENST00000577728 79 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC008752.3-201ENST00000588113 712 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AC078795.2-201ENST00000602835 1252 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 AL136363.2-201ENST00000604173 851 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MIR6134-201ENST00000617606 109 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 MIR3199-2-201ENST00000636243 86 ntBASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CPSF3Q9UKF6 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
CPSF3Q9UKF6 AC093536.2-201ENST00000565257 1406 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.41-201ENST00000362646 102 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1287P-201ENST00000362914 107 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.381-201ENST00000365666 102 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1060P-201ENST00000384664 107 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 SNORA67.4-201ENST00000384688 142 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 SNORD116-4-201ENST00000384733 96 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 MTCO3P41-201ENST00000414801 328 ntBASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CPSF3Q9UKF6 AL356010.1-201ENST00000456364 102 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 455.9 ms