Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RAP1BP3-201ENST00000407180 549 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RPL30P4-201ENST00000429309 333 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC012308.1-201ENST00000451232 178 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC006026.2-201ENST00000457376 180 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RPL36AP48-201ENST00000485521 314 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC092436.1-201ENST00000506450 503 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 MTND3P25-201ENST00000509243 135 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RN7SKP132-201ENST00000516001 208 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 Y_RNA.687-201ENST00000516558 91 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RNU6-1178P-201ENST00000516674 107 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC024909.2-201ENST00000553035 286 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 MTND1P15-201ENST00000579262 949 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC105245.1-201ENST00000581934 244 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 ZNF861P-201ENST00000588126 639 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC091805.2-201ENST00000603848 235 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AL391646.1-201ENST00000603860 190 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 NDUFA8P1-201ENST00000605525 367 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AL627309.6-201ENST00000606857 840 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC069294.1-201ENST00000608397 350 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 AC244517.12-201ENST00000623581 663 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 MIR3529-201ENST00000637713 78 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
VPS28Q9UK41 Y_RNA.1-201ENST00000352915 104 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 Y_RNA.111-201ENST00000363248 100 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 MIR181A2-201ENST00000384863 110 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 RPS4XP8-201ENST00000402039 771 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AL138827.1-201ENST00000402666 306 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 U6atac.2-201ENST00000408644 118 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 RNU2-29P-201ENST00000410423 189 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 RNU6-607P-201ENST00000411283 108 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 PGBD4P6-201ENST00000421501 610 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AL451074.3-201ENST00000437709 472 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 CALM1P1-201ENST00000442082 433 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 EEF1B2P7-201ENST00000451177 676 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC080013.2-201ENST00000460866 323 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC018437.1-201ENST00000492214 406 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC074344.1-201ENST00000512823 224 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AP003392.2-201ENST00000527269 208 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC010186.2-204ENST00000537668 439 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC135279.1-201ENST00000543493 504 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 LRRC37A5P-203ENST00000580181 585 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC078795.2-201ENST00000602835 1252 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC080013.6-201ENST00000606185 215 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 AC007684.1-201ENST00000609671 477 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS28Q9UK41 CR381653.2-201ENST00000624041 768 ntBASIC2.84□□□□□ -1.95
VPS28Q9UK41 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS28Q9UK41 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 Z75746.1-201ENST00000440243 2080 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 RNU6-942P-201ENST00000363002 107 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC097463.2-201ENST00000421074 142 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 MTCO2P19-201ENST00000427513 598 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AL365400.1-201ENST00000431854 640 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 AL118520.1-201ENST00000450770 291 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 RNU7-63P-201ENST00000459054 62 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 LRRC34P2-201ENST00000514850 553 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 RNA5SP356-201ENST00000515972 94 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC079600.2-201ENST00000550076 130 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC009063.1-201ENST00000563342 702 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC023824.2-201ENST00000566185 400 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 BNIP3P30-201ENST00000601184 574 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC096772.1-201ENST00000609146 564 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 AC026585.1-201ENST00000619582 524 ntBASIC2.83□□□□□ -1.96
VPS28Q9UK41 HAUS6P2-201ENST00000433254 2404 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AL139276.1-201ENST00000311910 1001 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 MIR26A1-201ENST00000362205 77 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AL133475.1-201ENST00000404414 305 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 RNU4-55P-201ENST00000410731 137 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AL669831.1-202ENST00000428504 417 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 GTF2IP13-201ENST00000438487 386 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms