Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL035666.1-201ENST00000446195 348 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RN7SL283P-201ENST00000489055 303 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 OR5D17P-201ENST00000531492 978 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 UBL5P2-201ENST00000583788 219 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC023043.2-201ENST00000589678 1026 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 SNRPGP15-201ENST00000600149 222 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL670379.6-201ENST00000603753 252 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC092747.3-201ENST00000603769 301 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC008162.1-201ENST00000604718 254 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL670379.1-201ENST00000604752 252 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL670379.5-201ENST00000605253 252 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL670379.8-201ENST00000605353 252 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL670379.7-201ENST00000605823 252 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC012409.4-201ENST00000612923 249 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 FAM157A-202ENST00000615155 405 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL450472.3-201ENST00000615578 367 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC007485.1-201ENST00000616755 206 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 SNORD39.4-201ENST00000620099 78 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AL353748.2-201ENST00000622148 471 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
EBF3Q9H4W6 AC005183.1-201ENST00000603687 1979 ntBASIC3.31□□□□□ -1.88
EBF3Q9H4W6 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 ZNF519P1-201ENST00000449011 1626 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.135-201ENST00000363439 95 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 SNORA80A-201ENST00000363922 136 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 RNU1-140P-201ENST00000365040 165 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.401-201ENST00000383965 117 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 SNORA44-201ENST00000384584 132 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 RN7SKP58-201ENST00000411010 305 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC004866.2-201ENST00000438285 481 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AL731563.1-201ENST00000442202 214 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 GAPDHP27-201ENST00000447427 1020 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC104058.1-201ENST00000448028 297 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 RN7SL432P-201ENST00000484057 298 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 RNU6-794P-201ENST00000517261 64 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC004817.2-201ENST00000561794 651 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC008269.2-201ENST00000561915 1105 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AC138761.3-201ENST00000579993 334 ntBASIC3.3□□□□□ -1.88
EBF3Q9H4W6 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
EBF3Q9H4W6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.158-201ENST00000363651 101 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RNU6-82P-201ENST00000363970 107 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 SNORA23-201ENST00000365128 182 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 SNORD116-11-201ENST00000383882 92 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RNU6-1032P-201ENST00000384100 107 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.473-201ENST00000384333 102 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.482-201ENST00000384377 111 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.527-201ENST00000384573 102 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.557-201ENST00000384680 107 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RNU6-882P-201ENST00000391025 103 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RNU6-550P-201ENST00000391057 101 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 MRPL42P3-201ENST00000401492 326 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 SSXP9-201ENST00000417503 292 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC025750.2-201ENST00000442609 450 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RPS15AP27-201ENST00000449183 343 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC010631.1-201ENST00000474150 156 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RPL31P13-201ENST00000484151 370 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RBBP4P6-201ENST00000508098 202 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC104806.1-201ENST00000508720 308 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 RPL39P5-202ENST00000512505 151 ntBASIC3.29□□□□□ -1.88
EBF3Q9H4W6 AC008885.1-201ENST00000514930 301 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms