Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
LIME1Q9H400 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-517P-201ENST00000384362 110 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-658P-201ENST00000384606 106 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-1060P-201ENST00000384664 107 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 MIR9-1-201ENST00000385198 89 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6-903P-201ENST00000391270 109 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC096649.2-201ENST00000416186 393 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.36□□□□□ -2.03
LIME1Q9H400 AC104332.2-201ENST00000429959 156 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC000111.3-201ENST00000433478 193 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.36□□□□□ -2.03
LIME1Q9H400 MTND1P34-201ENST00000438556 671 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC016691.1-201ENST00000441321 413 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 MRPL50P4-201ENST00000446432 475 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.36□□□□□ -2.03
LIME1Q9H400 AC107626.1-201ENST00000471084 183 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 RPL23AP11-201ENST00000475260 469 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.36□□□□□ -2.03
LIME1Q9H400 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.36□□□□□ -2.03
LIME1Q9H400 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC016957.1-201ENST00000534895 309 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.36□□□□□ -2.03
LIME1Q9H400 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.36□□□□□ -2.03
LIME1Q9H400 MTCO3P23-201ENST00000561363 289 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 TPRKBP2-201ENST00000565969 475 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC025281.1-201ENST00000567026 265 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.36□□□□□ -2.03
LIME1Q9H400 DEFB131E-202ENST00000602581 683 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AC007621.1-201ENST00000604544 437 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 AL627309.6-201ENST00000606857 840 ntBASIC2.36□□□□□ -2.03
LIME1Q9H400 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.36□□□□□ -2.03
LIME1Q9H400 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.36□□□□□ -2.03
LIME1Q9H400 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
LIME1Q9H400 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
LIME1Q9H400 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LIME1Q9H400 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 RNU6-1322P-201ENST00000364309 107 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 SNORD114-30-201ENST00000364448 72 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 Y_RNA.481-201ENST00000384373 102 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 Y_RNA.516-201ENST00000384541 124 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 MIR181A1-201ENST00000385026 110 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 MIR767-201ENST00000390228 109 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 RNU6-750P-201ENST00000390946 107 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 RNU2-49P-201ENST00000410666 184 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AL353621.1-201ENST00000418219 243 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 BX276092.3-201ENST00000424182 230 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.35□□□□□ -2.03
LIME1Q9H400 SAR1AP4-201ENST00000429225 591 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.35□□□□□ -2.03
LIME1Q9H400 AL606489.2-201ENST00000433886 234 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 RPL23AP58-201ENST00000440453 469 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LIME1Q9H400 AC027673.1-201ENST00000456245 405 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 RNU6-261P-201ENST00000459506 102 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 RPS29P12-201ENST00000460178 152 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LIME1Q9H400 AC008716.1-201ENST00000511084 513 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC113155.1-201ENST00000511141 769 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.35□□□□□ -2.03
LIME1Q9H400 Y_RNA.693-201ENST00000516641 110 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 SNORD19.2-201ENST00000516978 73 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.35□□□□□ -2.03
LIME1Q9H400 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 AC006199.1-201ENST00000548728 219 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.35□□□□□ -2.03
LIME1Q9H400 AC021739.1-201ENST00000559631 174 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.35□□□□□ -2.03
LIME1Q9H400 MTCO3P13-201ENST00000577757 781 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 LRRC37A5P-203ENST00000580181 585 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.35□□□□□ -2.03
LIME1Q9H400 AC073539.2-201ENST00000597113 165 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.35□□□□□ -2.03
LIME1Q9H400 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.35□□□□□ -2.03
LIME1Q9H400 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.35□□□□□ -2.03
LIME1Q9H400 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
LIME1Q9H400 AL354685.2-201ENST00000448218 1447 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
LIME1Q9H400 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LIME1Q9H400 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
LIME1Q9H400 RNA5SP289-201ENST00000362332 137 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU6-1085P-201ENST00000363576 107 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 Y_RNA.255-201ENST00000364581 97 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU6-996P-201ENST00000365438 107 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 U8.9-201ENST00000365667 134 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU6-116P-201ENST00000384042 109 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 Y_RNA.505-201ENST00000384489 102 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU6-1127P-201ENST00000384580 107 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.34□□□□□ -2.03
LIME1Q9H400 RNA5SP21-201ENST00000410917 96 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms