Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC002543.1-201ENST00000299783 1954 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 RNA5SP111-201ENST00000411386 101 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC007283.2-201ENST00000424739 197 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 PSPHP1-201ENST00000450062 261 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 SNORA31.25-201ENST00000517242 134 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC087883.1-201ENST00000551882 391 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC145350.1-201ENST00000567426 208 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC109446.2-201ENST00000567872 497 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 NIFKP6-201ENST00000598115 845 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AL670379.2-201ENST00000604983 252 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AL670379.4-201ENST00000605279 254 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AL133173.2-201ENST00000614270 90 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 RMST_4.1-201ENST00000616886 107 ntBASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.29□□□□□ -1.88
CHMP4AQ9BY43 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 RNU6-61P-201ENST00000365528 109 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 MIR186-201ENST00000384988 86 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 RPS3AP3-201ENST00000411933 242 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 OR9R1P-201ENST00000412200 877 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 snoU13.14-201ENST00000459372 104 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 SNORA25.11-201ENST00000515935 105 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 RNU2-53P-201ENST00000516257 147 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 RN7SKP256-201ENST00000517201 314 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 RNU2-19P-201ENST00000517288 84 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 CKS1BP7-201ENST00000522230 235 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 AC004486.1-201ENST00000546846 233 ntBASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP4AQ9BY43 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNU6-655P-201ENST00000362858 107 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNU6-1097P-201ENST00000363586 107 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNA5SP456-201ENST00000364002 114 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNU6-622P-201ENST00000384272 103 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNU2-23P-201ENST00000410545 195 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AL513328.1-201ENST00000446460 224 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC090515.1-201ENST00000465295 476 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RN7SL297P-201ENST00000483161 293 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC010486.2-201ENST00000505572 483 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RN7SKP24-201ENST00000515888 284 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 MIR548AB-201ENST00000584917 84 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC005771.1-201ENST00000585581 349 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AC008521.1-201ENST00000587471 187 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 SNRPGP17-201ENST00000603780 214 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AP001506.1-201ENST00000615444 211 ntBASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP4AQ9BY43 RNU6-1210P-201ENST00000363775 107 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 SNORA25B-201ENST00000365507 128 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 MIR29B2-201ENST00000385055 81 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC114491.1-201ENST00000416095 246 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AL033528.1-201ENST00000453780 140 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 RNA5SP233-201ENST00000459153 113 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC107032.1-201ENST00000485945 480 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 RNA5SP148-201ENST00000516527 94 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC034114.1-201ENST00000520293 285 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 NDUFA5P6-201ENST00000542110 379 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 MIR3915-201ENST00000578518 97 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC090897.2-201ENST00000581715 130 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 AC120349.3-201ENST00000624377 529 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 U6.114-201ENST00000636407 96 ntBASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.26□□□□□ -1.89
CHMP4AQ9BY43 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 Y_RNA.22-201ENST00000362492 102 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms