Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 SNORD113.2-201ENST00000364166 89 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AL079342.1-201ENST00000401460 267 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 U3.37-201ENST00000408528 213 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 Y_RNA.602-201ENST00000410535 92 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 RNA5SP104-201ENST00000410989 118 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 RPS23P7-201ENST00000466210 444 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 SERF1AP1-201ENST00000514575 187 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 RNU6-1012P-201ENST00000516606 109 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 SCARNA24.2-201ENST00000516968 130 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC090281.1-201ENST00000523019 276 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC073657.2-201ENST00000605661 303 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC097372.5-201ENST00000623665 376 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC090617.7-201ENST00000623952 126 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC127459.3-201ENST00000624328 466 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC016588.2-201ENST00000632484 3021 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 AC233981.2-201ENST00000611524 1614 ntBASIC4.43□□□□□ -1.7
TRIM56Q9BRZ2 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 RNU6-78P-201ENST00000362897 107 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 SNORD113-8-201ENST00000363497 74 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 SNORA70.2-201ENST00000364506 135 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AC068538.1-201ENST00000376856 336 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 MIR93-201ENST00000385024 80 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 MIR513A2-201ENST00000385249 127 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 MIR493-201ENST00000385254 89 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AL033519.2-201ENST00000403958 392 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 RNA5SP31-201ENST00000411144 127 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 OR4C10P-201ENST00000434991 931 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 RPL37P4-201ENST00000448908 268 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 snoU13.30-201ENST00000458951 104 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 RPL35AP15-201ENST00000468042 339 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 SNORA25.14-201ENST00000516481 132 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AC069240.1-201ENST00000548774 375 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 LINC00933-203ENST00000559812 219 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM56Q9BRZ2 AL133412.1-201ENST00000380194 2992 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 RNU6-545P-201ENST00000362681 104 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 RNU6-290P-201ENST00000365212 101 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 MIR129-1-201ENST00000384972 72 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SNORD66.1-201ENST00000391230 76 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SDHCP2-201ENST00000398565 501 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AL358453.1-201ENST00000422522 250 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AC007389.2-201ENST00000434630 306 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 NDUFS5P3-201ENST00000450668 321 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 TOMM22P6-201ENST00000465035 409 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 RNA5SP497-201ENST00000516081 97 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AP006245.1-201ENST00000522549 120 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 IGKV2D-19-201ENST00000523346 262 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 MIR3690-201ENST00000580266 75 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 MIR4659A-201ENST00000580269 81 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 MIR4715-201ENST00000584117 79 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 AC024153.1-201ENST00000603103 365 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SCARNA4-201ENST00000629045 128 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 U2.21-201ENST00000637295 81 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SRP72P2-201ENST00000344851 1979 ntBASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM56Q9BRZ2 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM56Q9BRZ2 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.4□□□□□ -1.7
TRIM56Q9BRZ2 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM56Q9BRZ2 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM56Q9BRZ2 RAD17P1-201ENST00000418130 2042 ntBASIC4.4□□□□□ -1.7
TRIM56Q9BRZ2 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM56Q9BRZ2 RNU1-15P-201ENST00000353977 144 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms