Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ZNF720P1-201ENST00000562403 1939 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CDX2Q99626 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CDX2Q99626 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CDX2Q99626 Y_RNA.97-201ENST00000363094 102 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 SNORA3A-201ENST00000364113 130 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 RNU6-188P-201ENST00000364207 107 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 Y_RNA.245-201ENST00000364493 95 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 Y_RNA.302-201ENST00000364997 102 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
CDX2Q99626 SNORD116-2-201ENST00000384274 95 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 SNORD116-6-201ENST00000384711 96 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CDX2Q99626 U3.40-201ENST00000408706 208 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 RNU6-920P-201ENST00000410926 92 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.87□□□□□ -2.11
CDX2Q99626 USP9YP27-201ENST00000418455 438 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 SEPT2P1-201ENST00000419651 180 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.87□□□□□ -2.11
CDX2Q99626 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.87□□□□□ -2.11
CDX2Q99626 AL022400.1-201ENST00000423946 935 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AL593851.1-201ENST00000426171 157 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC007560.1-201ENST00000426912 237 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.87□□□□□ -2.11
CDX2Q99626 RPL23AP35-201ENST00000451906 501 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 CECR9-201ENST00000453421 199 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.87□□□□□ -2.11
CDX2Q99626 AC026801.1-201ENST00000497178 464 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.87□□□□□ -2.11
CDX2Q99626 AC034244.1-201ENST00000507687 207 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 RNU6-759P-201ENST00000516740 103 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 DEFB108A-201ENST00000530110 222 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.87□□□□□ -2.11
CDX2Q99626 AC007834.2-201ENST00000536310 343 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 OSBPL9P5-201ENST00000542581 171 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.87□□□□□ -2.11
CDX2Q99626 AC109446.2-201ENST00000567872 497 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.87□□□□□ -2.11
CDX2Q99626 AL391813.1-201ENST00000603098 260 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AL355877.2-201ENST00000603670 358 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC091965.4-201ENST00000607691 587 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC108747.1-201ENST00000609508 535 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 DUSP12P1-201ENST00000612874 516 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AC079416.3-201ENST00000624479 549 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 AL136313.1-201ENST00000624804 202 ntBASIC1.87□□□□□ -2.11
CDX2Q99626 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CDX2Q99626 RNU1-42P-201ENST00000364033 160 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 SNORD23.1-201ENST00000408212 104 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 POLHP1-201ENST00000411806 470 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 RPL23AP39-201ENST00000415533 405 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CDX2Q99626 MICF-203ENST00000432679 129 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.86□□□□□ -2.11
CDX2Q99626 MTND4P32-201ENST00000437189 1237 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AL133217.1-201ENST00000450980 425 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 ANKRD26P4-201ENST00000455755 950 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 RPL23AP41-201ENST00000484754 458 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC104685.1-201ENST00000502445 371 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 SNORA31.6-201ENST00000516241 130 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AP006587.4-201ENST00000526053 529 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.86□□□□□ -2.11
CDX2Q99626 FAM92A1P1-201ENST00000528023 890 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.86□□□□□ -2.11
CDX2Q99626 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.86□□□□□ -2.11
CDX2Q99626 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.86□□□□□ -2.11
CDX2Q99626 NIFKP6-201ENST00000598115 845 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC010620.1-201ENST00000601088 1102 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AP000403.1-201ENST00000603349 851 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC112187.2-201ENST00000604345 283 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC097065.2-201ENST00000608159 533 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.86□□□□□ -2.11
CDX2Q99626 AL031601.2-202ENST00000622650 282 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC103706.2-201ENST00000638080 240 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 AC010329.5-201ENST00000623497 2174 ntBASIC1.86□□□□□ -2.11
CDX2Q99626 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CDX2Q99626 Y_RNA.46-201ENST00000362695 102 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 Y_RNA.178-201ENST00000363832 102 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 MIR598-201ENST00000384868 97 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 AC119751.3-201ENST00000399720 670 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX2Q99626 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX2Q99626 AL589823.1-201ENST00000429577 183 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 AL645568.3-201ENST00000433683 316 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 TIMM9P1-201ENST00000436122 256 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CDX2Q99626 OR6C5P-201ENST00000452388 923 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 RPS27AP8-201ENST00000452665 445 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX2Q99626 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.85□□□□□ -2.11
CDX2Q99626 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX2Q99626 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX2Q99626 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.85□□□□□ -2.11
CDX2Q99626 RNU7-125P-201ENST00000458760 62 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 BET1P1-201ENST00000482276 359 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 RPS27P21-201ENST00000486977 252 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CDX2Q99626 RNU6-1129P-201ENST00000515964 104 ntBASIC1.85□□□□□ -2.11
CDX2Q99626 RNU6-1003P-201ENST00000517099 105 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms