| CNTN4 | Q8IWV2 | AL670379.4-201 | ENST00000605279 | 254 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SNORD14A-201 | ENST00000606526 | 91 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL161423.1-201 | ENST00000613700 | 262 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC023490.1-201 | ENST00000614584 | 375 nt | TSL 2 BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | ZNRD1-AS1_2.5-201 | ENST00000614729 | 76 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC009233.1-201 | ENST00000616477 | 371 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC011718.1-201 | ENST00000622906 | 375 nt | TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AP003485.2-201 | ENST00000623636 | 610 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC244517.5-202 | ENST00000623741 | 500 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | U6.114-201 | ENST00000636407 | 96 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SLC39A10-201 | ENST00000359634 | 5322 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | DNAH7-201 | ENST00000312428 | 12394 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | OR2L2-203 | ENST00000642011 | 4225 nt | APPRIS P1 BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | KTN1-203 | ENST00000395309 | 4021 nt | APPRIS ALT2 TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | CKAP2P1-201 | ENST00000555477 | 2049 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | TAB3-205 | ENST00000378933 | 6671 nt | APPRIS P1 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RNU6-1097P-201 | ENST00000363586 | 107 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SNORD14B-201 | ENST00000364533 | 90 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RNU1-57P-201 | ENST00000384491 | 166 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MIR196B-201 | ENST00000384852 | 84 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MIR561-201 | ENST00000385216 | 97 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MT-TH-201 | ENST00000387441 | 69 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL133475.1-201 | ENST00000404414 | 305 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | LINC00301-202 | ENST00000412599 | 772 nt | TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC004543.1-201 | ENST00000418764 | 369 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC133106.1-201 | ENST00000419029 | 397 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL157884.2-201 | ENST00000424177 | 551 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL136234.1-201 | ENST00000437080 | 349 nt | TSL 2 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC009238.1-201 | ENST00000442165 | 424 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC009237.6-201 | ENST00000446969 | 424 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL355997.1-202 | ENST00000454361 | 610 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | ANKRD62P1-PARP4P3-201 | ENST00000456726 | 1181 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC140059.1-201 | ENST00000489238 | 361 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC020703.1-201 | ENST00000505051 | 521 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | HMGB3P3-201 | ENST00000510526 | 400 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RNA5SP148-201 | ENST00000516527 | 94 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC108449.1-202 | ENST00000517632 | 478 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AP003072.2-201 | ENST00000527756 | 676 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC239802.1-201 | ENST00000531288 | 406 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC145350.1-201 | ENST00000567426 | 208 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MIR4435-1-201 | ENST00000582552 | 80 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MIR5007-201 | ENST00000583098 | 95 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | BNIP3P30-201 | ENST00000601184 | 574 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | DEFB131E-202 | ENST00000602581 | 683 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC073410.2-201 | ENST00000603240 | 332 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC090578.1-201 | ENST00000604955 | 591 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC021646.1-201 | ENST00000605469 | 484 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC010378.1-201 | ENST00000619270 | 362 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC091931.1-201 | ENST00000623488 | 728 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AP000770.2-201 | ENST00000623694 | 100 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SMARCAD1-201 | ENST00000354268 | 4912 nt | APPRIS P3 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | HSFY2-201 | ENST00000304790 | 1444 nt | APPRIS P5 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | HSFY1-201 | ENST00000307393 | 1444 nt | APPRIS P5 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RBBP8P1-201 | ENST00000449447 | 1844 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | MIR95-201 | ENST00000385072 | 81 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RNA5SP270-201 | ENST00000411361 | 118 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | GPR143P-201 | ENST00000434155 | 205 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC112518.1-201 | ENST00000436089 | 575 nt | TSL 4 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC092573.2-202 | ENST00000437243 | 336 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | IFNA11P-201 | ENST00000446352 | 526 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AL138830.2-202 | ENST00000446358 | 786 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SNORD42A-201 | ENST00000459584 | 64 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | KLF3P2-201 | ENST00000465138 | 268 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RAP1BP2-201 | ENST00000478270 | 544 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | LNX1-AS1-203 | ENST00000511989 | 488 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SCARNA24.1-201 | ENST00000516465 | 137 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RNU6-685P-201 | ENST00000517088 | 95 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | HDAC2-AS2-206 | ENST00000517965 | 850 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC069133.1-201 | ENST00000522857 | 566 nt | TSL 4 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | SPINK7-205 | ENST00000523535 | 299 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | CBX3P7-201 | ENST00000532876 | 502 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AP005062.1-201 | ENST00000581502 | 607 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC098848.2-201 | ENST00000588023 | 330 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC012594.1-269 | ENST00000600489 | 628 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC116312.1-201 | ENST00000606841 | 314 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | AC110994.2-201 | ENST00000635481 | 492 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| CNTN4 | Q8IWV2 | RGS18-201 | ENST00000367460 | 2150 nt | APPRIS P1 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC003984.1-201 | ENST00000450977 | 4104 nt | TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | FGF7P2-201 | ENST00000332473 | 296 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | RNU1-91P-201 | ENST00000364746 | 163 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | RNU6-301P-201 | ENST00000384277 | 107 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | RNY3P10-201 | ENST00000384764 | 102 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AF274854.1-201 | ENST00000413236 | 615 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC010731.2-201 | ENST00000415275 | 440 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AL139413.1-201 | ENST00000421309 | 217 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | LINC01040-201 | ENST00000425048 | 666 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | LINC00459-201 | ENST00000431656 | 376 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC009961.2-201 | ENST00000435771 | 251 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | KRTAP19-11P-201 | ENST00000439851 | 104 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AP000936.1-201 | ENST00000442124 | 483 nt | TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC004936.1-201 | ENST00000451755 | 361 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | snoU109.2-201 | ENST00000459316 | 135 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | PLCXD2-AS1-201 | ENST00000493131 | 491 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC097467.3-213 | ENST00000508191 | 726 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC063919.1-201 | ENST00000514281 | 254 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | AC090572.1-201 | ENST00000519251 | 160 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | MTCYBP20-201 | ENST00000524239 | 1129 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| CNTN4 | Q8IWV2 | CYCSP26-201 | ENST00000534107 | 320 nt | BASIC | 2.33 | □□□□□ -2.04 | | |