Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC093010.3-201ENST00000570269 15214 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC007823.1-201ENST00000569932 1566 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.11-201ENST00000362375 109 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 RNU4-79P-201ENST00000362764 141 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 Y_RNA.67-201ENST00000362870 100 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 SNORD56.1-201ENST00000362913 68 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-306P-201ENST00000384617 107 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 RNU6-370P-201ENST00000411008 104 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AL358075.3-201ENST00000426289 226 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 RPS29P17-201ENST00000430795 166 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 GOT2P5-201ENST00000433995 546 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 OSTCP8-201ENST00000445117 448 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC146507.2-201ENST00000460608 476 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 SMURF2P1-201ENST00000514992 481 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 SNORA31.18-201ENST00000517043 134 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 SNORA31.23-201ENST00000517219 133 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 FRG2DP-202ENST00000566967 323 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 IPO5P1-202ENST00000600039 287 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AL133393.1-201ENST00000603277 287 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC019159.1-201ENST00000605094 187 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC024581.2-201ENST00000619986 252 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC097372.5-201ENST00000623665 376 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC090617.7-201ENST00000623952 126 ntBASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC28AQ8IWP9 AC032011.1-201ENST00000611703 1549 ntBASIC3.09□□□□□ -1.92
CCDC28AQ8IWP9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 RNVU1-6-201ENST00000364688 164 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AL513475.1-201ENST00000406602 315 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 Z99755.1-201ENST00000414048 380 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 SYF2P2-201ENST00000417620 583 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC236972.2-201ENST00000434979 310 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC006011.1-201ENST00000442758 349 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 NUTF2P7-201ENST00000453086 375 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.632-201ENST00000459189 102 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 RN7SL691P-201ENST00000494487 301 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 RNU5B-3P-201ENST00000516601 115 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-612P-201ENST00000516909 102 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC007448.1-201ENST00000582714 234 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC078899.3-201ENST00000599065 212 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AL356218.2-201ENST00000605264 187 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC018889.1-201ENST00000605372 397 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC018462.2-201ENST00000605375 395 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-91P-201ENST00000607774 107 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AC069234.5-201ENST00000611056 416 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 UCA1.1-201ENST00000620952 75 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 AL359757.2-201ENST00000624309 274 ntBASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
CCDC28AQ8IWP9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RBBP8P1-201ENST00000449447 1844 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC099654.7-201ENST00000635788 2127 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.58-201ENST00000362807 102 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.154-201ENST00000363624 102 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 SNORD35B-201ENST00000363660 87 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RNY3P1-201ENST00000365085 102 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RNY3-201ENST00000365484 102 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.490-201ENST00000384413 102 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 SAR1AP2-201ENST00000392696 594 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RPL21P3-201ENST00000395517 478 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RN7SKP58-201ENST00000411010 305 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 MTCO2P27-201ENST00000420740 428 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 MTND4P28-201ENST00000426217 387 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AL133396.1-201ENST00000432048 687 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 NOTCH2P1-201ENST00000443481 624 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RPL21P23-201ENST00000446654 460 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 SNORD5.1-201ENST00000458800 75 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RNA5SP246-201ENST00000458909 119 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RPL21P11-201ENST00000461458 483 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RN7SL303P-201ENST00000469773 251 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RPL29P14-201ENST00000495837 428 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms