Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SUMO2P14-201ENST00000604488 293 ntBASIC-0.01□□□□□ -2.41
LINC00643Q86TS7 AC004805.2-201ENST00000605382 482 ntBASIC-0.01□□□□□ -2.41
LINC00643Q86TS7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC-0.01□□□□□ -2.41
LINC00643Q86TS7 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC-0.01□□□□□ -2.41
LINC00643Q86TS7 RNU4-79P-201ENST00000362764 141 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 MIR548B-201ENST00000385247 97 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 MIR323B-201ENST00000385269 82 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 RNU6-910P-201ENST00000390844 107 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 RNU2-68P-201ENST00000410878 191 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 CCDC58P2-201ENST00000417131 366 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 MOB1AP2-201ENST00000446060 614 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 MTCO2P25-201ENST00000447065 681 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC092685.1-201ENST00000447960 1243 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC108740.1-201ENST00000498629 225 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AKIRIN2P1-201ENST00000505898 352 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC022493.2-201ENST00000506122 481 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 SNORA68.3-201ENST00000515906 83 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 RN7SKP49-201ENST00000516675 260 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 MIR4672-201ENST00000583126 81 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AL357094.1-201ENST00000603845 844 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC069114.2-201ENST00000604699 304 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC239868.4-201ENST00000608318 671 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC243829.6-201ENST00000612652 106 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 DLEU1_1.1-201ENST00000618107 190 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 AC138627.2-201ENST00000624202 601 ntBASIC-0.02□□□□□ -2.41
LINC00643Q86TS7 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 RNU6-53P-201ENST00000365367 106 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AL139397.2-201ENST00000404529 772 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AL022400.1-201ENST00000423946 935 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC098934.3-201ENST00000430450 190 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 RPEP5-201ENST00000441137 268 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 CALM1P1-201ENST00000442082 433 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 MTCO3P2-201ENST00000457365 171 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 COX7A2P2-201ENST00000505291 250 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 RNU6-678P-201ENST00000516832 109 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 IGHVII-53-1-201ENST00000519538 255 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC027309.2-201ENST00000520566 192 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC027807.1-201ENST00000559921 996 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AP000654.2-201ENST00000605633 586 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 AC013476.2-201ENST00000614456 459 ntBASIC-0.03□□□□□ -2.41
LINC00643Q86TS7 MIRLET7D-201ENST00000362263 87 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 RNU6-1327P-201ENST00000365302 105 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 EBAG9P1-201ENST00000418955 543 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 OR9N1P-202ENST00000494289 481 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 TRAPPC2P7-201ENST00000509650 231 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 RNA5SP384-201ENST00000516615 116 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 RN7SL622P-201ENST00000585292 275 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC107304.1-201ENST00000604229 296 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC016252.1-201ENST00000609721 474 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 AC092106.3-201ENST00000611308 722 ntBASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC-0.04□□□□□ -2.42
LINC00643Q86TS7 RNU6-386P-201ENST00000362650 107 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 SNORA70B-201ENST00000384210 135 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 RNA5SP171-201ENST00000391071 115 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 ATP5J2P3-201ENST00000451550 258 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 MTCYBP43-201ENST00000513621 740 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 SNORA3.4-201ENST00000515969 96 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 SNORA31.4-201ENST00000516049 129 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 RNU6-548P-201ENST00000517083 115 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 MIR5094-201ENST00000578766 85 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC090330.1-201ENST00000588646 764 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC002545.1-201ENST00000592511 181 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC130454.1-201ENST00000622948 401 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 AC079416.3-201ENST00000624479 549 ntBASIC-0.05□□□□□ -2.42
LINC00643Q86TS7 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 RNU6-543P-201ENST00000362576 108 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 SNORA51.6-201ENST00000384151 125 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 RNU6-160P-201ENST00000384591 107 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms