Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TAF9BP2-201ENST00000400856 499 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 UBE2FP1-201ENST00000416536 447 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL035410.1-201ENST00000427409 427 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL049734.2-201ENST00000441066 616 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 VN1R10P-201ENST00000447106 875 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC079448.1-201ENST00000449377 373 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 TRBVB-201ENST00000477100 408 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 SCARNA3-201ENST00000517097 143 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 MIR4713-201ENST00000582691 75 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AP000403.1-201ENST00000603349 851 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC018618.2-201ENST00000604770 446 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC016542.1-201ENST00000608259 493 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNU1-58P-201ENST00000362413 163 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RPL36AP53-201ENST00000432891 316 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC073614.1-201ENST00000438690 650 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 SNRPGP12-201ENST00000449481 213 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 SCARNA15.2-201ENST00000516409 127 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC107953.1-201ENST00000522216 297 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL713866.2-201ENST00000603579 219 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL161423.1-201ENST00000613700 262 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 MIR8065-201ENST00000620577 100 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 SNORA25.8-201ENST00000364831 128 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AP002784.2-201ENST00000397300 549 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RPL21P24-201ENST00000413752 448 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 NANOGP2-201ENST00000435391 727 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 MTND5P14-201ENST00000441481 1267 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL096803.2-201ENST00000450032 677 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 Y_RNA.644-201ENST00000459006 113 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RPL22P13-201ENST00000493291 347 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC005741.1-201ENST00000511094 432 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC004817.2-201ENST00000561794 651 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC018638.7-201ENST00000605836 1114 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC008945.2-201ENST00000606056 604 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC092953.2-201ENST00000608000 699 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 U4.2-201ENST00000618561 85 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC092608.3-201ENST00000625017 386 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC083865.1-201ENST00000636634 831 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 ENSAP3-201ENST00000312710 333 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 MIR95-201ENST00000385072 81 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 MIR1468-201ENST00000410600 86 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC092573.2-201ENST00000434546 243 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC241584.1-201ENST00000438469 1241 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC002381.1-201ENST00000447049 280 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 HSPE1P13-201ENST00000451143 297 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC104073.1-201ENST00000451988 151 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RPL23AP3-201ENST00000453844 468 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC079140.2-201ENST00000506193 142 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC118282.2-201ENST00000508739 374 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RNU6-1256P-201ENST00000516539 103 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 RNU6-1282P-201ENST00000516735 96 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 SNORD19.2-201ENST00000516978 73 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AP006587.4-201ENST00000526053 529 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 CYB5AP5-201ENST00000549779 389 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL161729.4-201ENST00000604650 476 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC108676.2-201ENST00000605225 163 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AL391597.1-201ENST00000618707 694 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC097372.5-201ENST00000623665 376 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC099654.5-201ENST00000636479 350 ntBASIC0.43□□□□□ -2.34
CHD9Q3L8U1 AC005832.2-201ENST00000538921 1430 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 ZNF680P1-201ENST00000436625 1469 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU6-819P-201ENST00000364116 107 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU6-39P-201ENST00000384344 107 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU2-33P-201ENST00000410344 192 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RNU2-47P-201ENST00000410649 186 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 MED14P1-201ENST00000430517 648 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 MTND1P33-201ENST00000446251 917 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 ARPC3P5-201ENST00000448802 534 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 RPS27P22-201ENST00000478056 241 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC021739.1-201ENST00000559631 174 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 Pinc.1-201ENST00000616452 154 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 AC008443.7-201ENST00000622195 246 ntBASIC0.42□□□□□ -2.34
CHD9Q3L8U1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
CHD9Q3L8U1 EIF4EP2-201ENST00000422816 654 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms