Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.56□□□□□ -2
NKX2-1P43699 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.56□□□□□ -2
NKX2-1P43699 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.56□□□□□ -2
NKX2-1P43699 MIR892C-201ENST00000516410 77 ntBASIC2.56□□□□□ -2
NKX2-1P43699 RNU6-1314P-201ENST00000517139 104 ntBASIC2.56□□□□□ -2
NKX2-1P43699 SCARNA11.3-201ENST00000517276 130 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.56□□□□□ -2
NKX2-1P43699 AC026403.1-201ENST00000518938 295 ntBASIC2.56□□□□□ -2
NKX2-1P43699 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.56□□□□□ -2
NKX2-1P43699 MIR5583-1-201ENST00000580941 59 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.56□□□□□ -2
NKX2-1P43699 AC006130.2-201ENST00000586202 326 ntBASIC2.56□□□□□ -2
NKX2-1P43699 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-1P43699 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.56□□□□□ -2
NKX2-1P43699 AP000787.2-201ENST00000604432 568 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AL162713.1-201ENST00000604480 262 ntBASIC2.56□□□□□ -2
NKX2-1P43699 U3.45-201ENST00000607547 219 ntBASIC2.56□□□□□ -2
NKX2-1P43699 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.56□□□□□ -2
NKX2-1P43699 Z82243.1-201ENST00000609432 473 ntBASIC2.56□□□□□ -2
NKX2-1P43699 uc_338.25-201ENST00000613756 156 ntBASIC2.56□□□□□ -2
NKX2-1P43699 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
NKX2-1P43699 AC002064.3-201ENST00000623448 346 ntBASIC2.56□□□□□ -2
NKX2-1P43699 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
NKX2-1P43699 AC004944.1-201ENST00000517807 3059 ntBASIC2.56□□□□□ -2
NKX2-1P43699 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.56□□□□□ -2
NKX2-1P43699 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.56□□□□□ -2
NKX2-1P43699 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.56□□□□□ -2
NKX2-1P43699 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.56□□□□□ -2
NKX2-1P43699 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 CBX3P1-201ENST00000325243 554 ntBASIC2.55□□□□□ -2
NKX2-1P43699 Y_RNA.86-201ENST00000363020 111 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 RNU6-767P-201ENST00000384132 107 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL139039.1-201ENST00000401900 692 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL162578.1-201ENST00000406202 378 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL031121.1-201ENST00000406553 254 ntBASIC2.55□□□□□ -2
NKX2-1P43699 RAP1BP3-201ENST00000407180 549 ntBASIC2.55□□□□□ -2
NKX2-1P43699 U3.37-201ENST00000408528 213 ntBASIC2.55□□□□□ -2
NKX2-1P43699 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 Y_RNA.615-201ENST00000410769 117 ntBASIC2.55□□□□□ -2
NKX2-1P43699 BX323014.1-201ENST00000412876 237 ntBASIC2.55□□□□□ -2
NKX2-1P43699 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.55□□□□□ -2
NKX2-1P43699 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 AC091286.1-201ENST00000431233 461 ntBASIC2.55□□□□□ -2
NKX2-1P43699 IFNA20P-201ENST00000436840 528 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 AC098614.3-201ENST00000438957 440 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 AC006026.2-201ENST00000457376 180 ntBASIC2.55□□□□□ -2
NKX2-1P43699 PMCHL2-203ENST00000457791 237 ntBASIC2.55□□□□□ -2
NKX2-1P43699 RN7SL633P-201ENST00000488974 297 ntBASIC2.55□□□□□ -2
NKX2-1P43699 HMGN1P12-201ENST00000499125 195 ntBASIC2.55□□□□□ -2
NKX2-1P43699 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.55□□□□□ -2
NKX2-1P43699 COPS8P3-201ENST00000526024 482 ntBASIC2.55□□□□□ -2
NKX2-1P43699 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.55□□□□□ -2
NKX2-1P43699 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.55□□□□□ -2
NKX2-1P43699 AC100830.2-201ENST00000581636 240 ntBASIC2.55□□□□□ -2
NKX2-1P43699 MIR4276-201ENST00000584832 70 ntBASIC2.55□□□□□ -2
NKX2-1P43699 UBE2V2P2-201ENST00000587677 504 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AC011712.1-201ENST00000588959 234 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AC005261.5-201ENST00000596280 355 ntBASIC2.55□□□□□ -2
NKX2-1P43699 VN1R80P-201ENST00000597126 338 ntBASIC2.55□□□□□ -2
NKX2-1P43699 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 AC091152.3-201ENST00000604227 325 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.55□□□□□ -2
NKX2-1P43699 AL355073.2-201ENST00000612106 557 ntBASIC2.55□□□□□ -2
NKX2-1P43699 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AL031601.2-202ENST00000622650 282 ntBASIC2.55□□□□□ -2
NKX2-1P43699 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.55□□□□□ -2
NKX2-1P43699 AC090617.10-201ENST00000624308 134 ntBASIC2.55□□□□□ -2
NKX2-1P43699 SCARNA4-202ENST00000625402 129 ntBASIC2.55□□□□□ -2
NKX2-1P43699 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX2-1P43699 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.54□□□□□ -2
NKX2-1P43699 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.54□□□□□ -2
NKX2-1P43699 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-254P-201ENST00000363377 107 ntBASIC2.54□□□□□ -2
NKX2-1P43699 Y_RNA.160-201ENST00000363677 92 ntBASIC2.54□□□□□ -2
NKX2-1P43699 SNORD113-7-201ENST00000363762 77 ntBASIC2.54□□□□□ -2
NKX2-1P43699 SNORA68.1-201ENST00000364537 132 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-384P-201ENST00000364900 104 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-748P-201ENST00000384648 107 ntBASIC2.54□□□□□ -2
NKX2-1P43699 MIR200C-201ENST00000384980 68 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-876P-201ENST00000391295 104 ntBASIC2.54□□□□□ -2
NKX2-1P43699 PTMAP2-201ENST00000397627 327 ntBASIC2.54□□□□□ -2
NKX2-1P43699 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-1148P-201ENST00000410992 104 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AL096701.2-201ENST00000416920 238 ntBASIC2.54□□□□□ -2
NKX2-1P43699 CYCSP35-201ENST00000451978 304 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RNU6-329P-201ENST00000459618 107 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms