Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNU1-109P-201ENST00000383960 147 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 RNU6-456P-201ENST00000384493 107 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 SNORD116-4-201ENST00000384733 96 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 Y_RNA.582-201ENST00000391023 95 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 SNORA40C-201ENST00000391285 128 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 RPL19P1-201ENST00000411635 428 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC114491.1-201ENST00000416095 246 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 MTCO3P5-201ENST00000433620 714 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 RPL21P2-201ENST00000440049 481 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 C1DP4-201ENST00000455429 424 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 BTF3P15-201ENST00000455606 336 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AL441985.1-201ENST00000457727 251 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AL121769.1-201ENST00000469473 401 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC010493.1-201ENST00000513479 292 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 SCARNA24.1-201ENST00000516465 137 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 RNU6-410P-201ENST00000517006 107 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 OR5BN1P-201ENST00000532955 829 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC245505.1-201ENST00000556398 224 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC078795.2-201ENST00000602835 1252 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 Z84480.1-201ENST00000605131 311 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 RPL23AP88-201ENST00000605759 454 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC012409.4-201ENST00000612923 249 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 AC138649.3-201ENST00000622154 254 ntBASIC2.43□□□□□ -2.02
TNFRSF4P43489 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
TNFRSF4P43489 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 CDC27P3-201ENST00000635418 1910 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC103710.2-202ENST00000641454 2853 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 MTND4P27-201ENST00000450813 1354 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TNFRSF4P43489 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 RNU6-181P-201ENST00000363225 107 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 Z98749.2-208ENST00000381646 500 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 RNU6-259P-201ENST00000383999 107 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 SNORA24.1-201ENST00000384401 135 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 RNU6-1328P-201ENST00000410938 106 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 NDUFB4P5-201ENST00000415445 361 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC010975.2-201ENST00000427781 588 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 GPR143P-201ENST00000434155 205 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 TPTE2P5-203ENST00000458118 728 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 RNU6-445P-201ENST00000516949 107 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 IGKV3-31-201ENST00000523109 329 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 SUB1P2-201ENST00000556401 297 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC098848.2-201ENST00000588023 330 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 uc_338.14-201ENST00000613162 166 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC015540.1-201ENST00000615828 501 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 MIR7843-201ENST00000622274 79 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 MIR7157-201ENST00000635801 60 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AP006437.1-201ENST00000641440 3685 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 AC135776.4-201ENST00000624300 1904 ntBASIC2.42□□□□□ -2.02
TNFRSF4P43489 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TNFRSF4P43489 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TNFRSF4P43489 AL161431.1-201ENST00000618966 4205 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
TNFRSF4P43489 RNU6-898P-201ENST00000365627 104 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 TOMM20P4-201ENST00000427861 435 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC073464.1-201ENST00000429823 534 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AL451074.3-201ENST00000437709 472 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 FDX1P2-201ENST00000450769 375 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC023194.1-201ENST00000493084 308 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC116655.1-201ENST00000508324 901 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC023141.11-201ENST00000508864 202 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 RNU6-123P-201ENST00000516163 102 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC007536.1-201ENST00000533382 349 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 MIR3199-1-201ENST00000582434 88 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 MIR4765-201ENST00000585007 77 ntBASIC2.41□□□□□ -2.02
TNFRSF4P43489 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.41□□□□□ -2.02
TNFRSF4P43489 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms