Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
SOX3P41225 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SOX3P41225 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.54□□□□□ -2
SOX3P41225 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.54□□□□□ -2
SOX3P41225 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.53□□□□□ -2
SOX3P41225 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.53□□□□□ -2
SOX3P41225 RNU6-715P-201ENST00000365204 103 ntBASIC2.53□□□□□ -2
SOX3P41225 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 RNU6-1127P-201ENST00000384580 107 ntBASIC2.53□□□□□ -2
SOX3P41225 SNORD115-47-201ENST00000391226 86 ntBASIC2.53□□□□□ -2
SOX3P41225 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.53□□□□□ -2
SOX3P41225 AL512633.1-201ENST00000399931 655 ntBASIC2.53□□□□□ -2
SOX3P41225 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 AL353729.1-201ENST00000425044 720 ntBASIC2.53□□□□□ -2
SOX3P41225 AL669831.1-202ENST00000428504 417 ntBASIC2.53□□□□□ -2
SOX3P41225 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 GTF2IP20-201ENST00000431663 360 ntBASIC2.53□□□□□ -2
SOX3P41225 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 GTF2IP13-201ENST00000438487 386 ntBASIC2.53□□□□□ -2
SOX3P41225 SEPT14P3-201ENST00000439401 183 ntBASIC2.53□□□□□ -2
SOX3P41225 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.53□□□□□ -2
SOX3P41225 AL732372.2-207ENST00000445840 183 ntBASIC2.53□□□□□ -2
SOX3P41225 AL360271.2-201ENST00000447710 161 ntBASIC2.53□□□□□ -2
SOX3P41225 SEPT14P2-201ENST00000453405 183 ntBASIC2.53□□□□□ -2
SOX3P41225 SNORD109B-201ENST00000458961 67 ntBASIC2.53□□□□□ -2
SOX3P41225 SNORD109A-201ENST00000459128 67 ntBASIC2.53□□□□□ -2
SOX3P41225 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.53□□□□□ -2
SOX3P41225 AC008716.1-201ENST00000511084 513 ntBASIC2.53□□□□□ -2
SOX3P41225 SEPT14P4-201ENST00000513445 186 ntBASIC2.53□□□□□ -2
SOX3P41225 AC112206.3-201ENST00000514578 389 ntBASIC2.53□□□□□ -2
SOX3P41225 RNU6-718P-201ENST00000516166 105 ntBASIC2.53□□□□□ -2
SOX3P41225 RNU6-572P-201ENST00000516724 80 ntBASIC2.53□□□□□ -2
SOX3P41225 RNU6-826P-201ENST00000516827 104 ntBASIC2.53□□□□□ -2
SOX3P41225 SNORA31.19-201ENST00000517079 126 ntBASIC2.53□□□□□ -2
SOX3P41225 FO082796.1-201ENST00000523795 183 ntBASIC2.53□□□□□ -2
SOX3P41225 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.53□□□□□ -2
SOX3P41225 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.53□□□□□ -2
SOX3P41225 DNAJC8P1-201ENST00000554535 372 ntBASIC2.53□□□□□ -2
SOX3P41225 NUTF2P8-201ENST00000604593 363 ntBASIC2.53□□□□□ -2
SOX3P41225 AL035413.2-201ENST00000604801 525 ntBASIC2.53□□□□□ -2
SOX3P41225 AC004852.3-201ENST00000614131 326 ntBASIC2.53□□□□□ -2
SOX3P41225 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.53□□□□□ -2
SOX3P41225 FER-210ENST00000628534 558 ntTSL 5 BASIC2.53□□□□□ -2
SOX3P41225 MIR3688-2-201ENST00000636963 87 ntBASIC2.53□□□□□ -2
SOX3P41225 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.53□□□□□ -2
SOX3P41225 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SOX3P41225 AC062016.1-201ENST00000355719 319 ntBASIC2.52□□□□□ -2.01
SOX3P41225 MIR412-201ENST00000362142 91 ntBASIC2.52□□□□□ -2.01
SOX3P41225 MIR26A1-201ENST00000362205 77 ntBASIC2.52□□□□□ -2.01
SOX3P41225 Y_RNA.38-201ENST00000362617 102 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU6-799P-201ENST00000363567 107 ntBASIC2.52□□□□□ -2.01
SOX3P41225 CD24P4-201ENST00000382840 243 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU6-166P-201ENST00000384371 107 ntBASIC2.52□□□□□ -2.01
SOX3P41225 SNORD70.1-201ENST00000391007 85 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AL360182.1-201ENST00000397433 468 ntBASIC2.52□□□□□ -2.01
SOX3P41225 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU2-52P-201ENST00000410680 190 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNA5SP21-201ENST00000410917 96 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU6-193P-201ENST00000410977 107 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNA5SP184-201ENST00000411071 108 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RPL7P10-201ENST00000417407 739 ntBASIC2.52□□□□□ -2.01
SOX3P41225 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.52□□□□□ -2.01
SOX3P41225 USP9YP28-201ENST00000435142 589 ntBASIC2.52□□□□□ -2.01
SOX3P41225 NDUFB1P2-201ENST00000449477 176 ntBASIC2.52□□□□□ -2.01
SOX3P41225 FGF7P6-202ENST00000451282 293 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AP000705.1-201ENST00000454567 350 ntBASIC2.52□□□□□ -2.01
SOX3P41225 SCARNA18-201ENST00000459004 134 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.52□□□□□ -2.01
SOX3P41225 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SOX3P41225 RNU6-1178P-201ENST00000516674 107 ntBASIC2.52□□□□□ -2.01
SOX3P41225 SNORD60.2-201ENST00000516883 86 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU6-1183P-201ENST00000517054 60 ntBASIC2.52□□□□□ -2.01
SOX3P41225 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.52□□□□□ -2.01
SOX3P41225 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.52□□□□□ -2.01
SOX3P41225 MTND1P35-201ENST00000526739 508 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.52□□□□□ -2.01
SOX3P41225 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.52□□□□□ -2.01
SOX3P41225 MTCO3P23-201ENST00000561363 289 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.52□□□□□ -2.01
SOX3P41225 MIR3605-201ENST00000583214 100 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC006023.1-201ENST00000603944 259 ntBASIC2.52□□□□□ -2.01
SOX3P41225 DISC2.1-201ENST00000612827 205 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.52□□□□□ -2.01
SOX3P41225 U6.42-201ENST00000618440 107 ntBASIC2.52□□□□□ -2.01
SOX3P41225 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.52□□□□□ -2.01
SOX3P41225 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.52□□□□□ -2.01
SOX3P41225 U6.99-201ENST00000637524 83 ntBASIC2.52□□□□□ -2.01
SOX3P41225 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
SOX3P41225 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.52□□□□□ -2.01
SOX3P41225 AC091564.4-201ENST00000533934 2194 ntBASIC2.51□□□□□ -2.01
SOX3P41225 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
SOX3P41225 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 AC110491.1-201ENST00000562191 2010 ntBASIC2.51□□□□□ -2.01
SOX3P41225 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
SOX3P41225 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
SOX3P41225 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SOX3P41225 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 560.4 ms