Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD9P28356 AC016925.2-201ENST00000605108 242 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 MIR15A-201ENST00000607334 83 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC019193.3-201ENST00000609144 554 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 uc_338.25-201ENST00000613756 156 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC034102.8-201ENST00000615146 484 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 AC010378.1-201ENST00000619270 362 ntBASIC3.28□□□□□ -1.88
HOXD9P28356 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD9P28356 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD9P28356 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD9P28356 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXD9P28356 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
HOXD9P28356 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.28□□□□□ -1.89
HOXD9P28356 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
HOXD9P28356 ZNF807-201ENST00000328088 1707 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD9P28356 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD9P28356 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD9P28356 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD9P28356 Y_RNA.28-201ENST00000362554 111 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 Y_RNA.31-201ENST00000362574 102 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 RNU5A-1-201ENST00000362698 116 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 RNU6-288P-201ENST00000363690 104 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 RNU6-45P-201ENST00000384471 107 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD9P28356 RPL7P37-201ENST00000425095 738 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD9P28356 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD9P28356 HMGB1P27-201ENST00000431429 603 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 GPM6BP2-201ENST00000432046 144 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 GPM6BP1-201ENST00000446387 144 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AC087588.1-201ENST00000462203 316 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AC087884.1-201ENST00000469738 328 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 HSPE1P6-201ENST00000479457 291 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD9P28356 AC116337.1-201ENST00000509680 687 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD9P28356 RNU6-1016P-201ENST00000516689 94 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD9P28356 AC087854.1-201ENST00000519706 414 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HOXD9P28356 AL355836.1-201ENST00000555951 870 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD9P28356 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD9P28356 AC012119.1-201ENST00000603184 222 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AC133104.2-201ENST00000615272 193 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 AC008121.3-201ENST00000618726 433 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD9P28356 MTND5P19-201ENST00000424872 1794 ntBASIC3.27□□□□□ -1.89
HOXD9P28356 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD9P28356 AL136164.4-201ENST00000625013 2135 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD9P28356 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD9P28356 SNORD3E-201ENST00000362899 217 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RNU6-639P-201ENST00000384074 107 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 Y_RNA.480-201ENST00000384364 102 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RNU6-310P-201ENST00000384655 107 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HOXD9P28356 AL138878.1-201ENST00000405131 347 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AL513331.1-201ENST00000411908 397 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 SNRPEP4-201ENST00000435815 279 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RPL30P15-201ENST00000457129 321 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD9P28356 HMGN1P18-201ENST00000457642 277 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RNA5SP310-201ENST00000459084 116 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RPL27AP5-201ENST00000469428 449 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC026801.1-201ENST00000497178 464 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD9P28356 AC097473.1-201ENST00000508142 408 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RNU6-976P-201ENST00000516086 111 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 RNU6-914P-201ENST00000516749 109 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXD9P28356 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD9P28356 AC110741.2-201ENST00000605278 268 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AP000654.2-201ENST00000605633 586 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD9P28356 ATP5A1P2-202ENST00000616464 443 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC068831.7-201ENST00000616954 363 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD9P28356 XIST_intron.1-201ENST00000619444 68 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 PLCE1P1-201ENST00000622094 305 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC073476.4-201ENST00000628409 72 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HOXD9P28356 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD9P28356 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD9P28356 AC090740.1-201ENST00000623193 2262 ntBASIC3.26□□□□□ -1.89
HOXD9P28356 KPNA2P1-201ENST00000458289 1591 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD9P28356 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXD9P28356 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HOXD9P28356 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD9P28356 RNU1-75P-201ENST00000347264 129 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 RPS4XP7-201ENST00000406274 780 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AC096664.2-201ENST00000411843 406 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD9P28356 SETP5-201ENST00000437270 562 ntBASIC3.25□□□□□ -1.89
HOXD9P28356 TXNP1-201ENST00000441872 371 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms