Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH3P20585 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 RPS15AP27-201ENST00000449183 343 ntBASIC2.79□□□□□ -1.96
MSH3P20585 HMGN2P26-201ENST00000463169 339 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AC018710.1-201ENST00000506509 158 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AC104136.1-201ENST00000512969 394 ntBASIC2.79□□□□□ -1.96
MSH3P20585 RNA5SP76-201ENST00000516277 87 ntBASIC2.79□□□□□ -1.96
MSH3P20585 SNORA9.3-201ENST00000516383 129 ntBASIC2.79□□□□□ -1.96
MSH3P20585 SNORA20.3-201ENST00000516880 132 ntBASIC2.79□□□□□ -1.96
MSH3P20585 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH3P20585 AP003122.3-201ENST00000526316 255 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AC084851.1-201ENST00000529105 249 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 BNIP3P6-201ENST00000549284 499 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AL118558.2-201ENST00000556294 238 ntBASIC2.79□□□□□ -1.96
MSH3P20585 HMGB1P14-201ENST00000557424 591 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH3P20585 BNIP3P10-201ENST00000605360 577 ntBASIC2.79□□□□□ -1.96
MSH3P20585 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH3P20585 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSH3P20585 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH3P20585 AL359693.1-201ENST00000614959 2407 ntBASIC2.79□□□□□ -1.96
MSH3P20585 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.79□□□□□ -1.96
MSH3P20585 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.79□□□□□ -1.96
MSH3P20585 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.78□□□□□ -1.96
MSH3P20585 AL365361.1-201ENST00000566942 3481 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC092593.1-201ENST00000515413 1815 ntBASIC2.78□□□□□ -1.96
MSH3P20585 FTLP6-201ENST00000355274 422 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-799P-201ENST00000363567 107 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-525P-201ENST00000363685 104 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-522P-201ENST00000364497 107 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-7-201ENST00000364784 107 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-8-201ENST00000365467 107 ntBASIC2.78□□□□□ -1.96
MSH3P20585 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-393P-201ENST00000384475 107 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-140P-201ENST00000384566 108 ntBASIC2.78□□□□□ -1.96
MSH3P20585 SNORD70.1-201ENST00000391007 85 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNU6-876P-201ENST00000391295 104 ntBASIC2.78□□□□□ -1.96
MSH3P20585 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH3P20585 AL590004.2-201ENST00000404787 371 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AL356776.1-201ENST00000406574 447 ntBASIC2.78□□□□□ -1.96
MSH3P20585 Y_RNA.615-201ENST00000410769 117 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH3P20585 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH3P20585 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH3P20585 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.78□□□□□ -1.96
MSH3P20585 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH3P20585 AC087499.2-201ENST00000432861 149 ntBASIC2.78□□□□□ -1.96
MSH3P20585 SNRPEP9-201ENST00000436794 238 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH3P20585 AL121601.2-201ENST00000438019 707 ntBASIC2.78□□□□□ -1.96
MSH3P20585 GSTA11P-201ENST00000452866 669 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH3P20585 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH3P20585 HIGD1AP13-201ENST00000509878 289 ntBASIC2.78□□□□□ -1.96
MSH3P20585 RNA5SP165-201ENST00000517142 115 ntBASIC2.78□□□□□ -1.96
MSH3P20585 MTCO3P23-201ENST00000561363 289 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AMZ2P1-203ENST00000565833 850 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH3P20585 ZNF861P-201ENST00000588126 639 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC023043.3-201ENST00000593113 385 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC004805.2-201ENST00000605382 482 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AL359198.2-201ENST00000611836 194 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC006386.2-201ENST00000624491 75 ntBASIC2.78□□□□□ -1.96
MSH3P20585 AC012005.1-201ENST00000624575 75 ntBASIC2.78□□□□□ -1.96
MSH3P20585 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
MSH3P20585 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH3P20585 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH3P20585 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH3P20585 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
MSH3P20585 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH3P20585 Y_RNA.86-201ENST00000363020 111 ntBASIC2.77□□□□□ -1.97
MSH3P20585 RNU6-82P-201ENST00000363970 107 ntBASIC2.77□□□□□ -1.97
MSH3P20585 RNU6-270P-201ENST00000364131 105 ntBASIC2.77□□□□□ -1.97
MSH3P20585 Y_RNA.399-201ENST00000383955 105 ntBASIC2.77□□□□□ -1.97
MSH3P20585 SNORA18.3-201ENST00000384122 132 ntBASIC2.77□□□□□ -1.97
MSH3P20585 MIR578-201ENST00000384828 96 ntBASIC2.77□□□□□ -1.97
MSH3P20585 MIR181A2-201ENST00000384863 110 ntBASIC2.77□□□□□ -1.97
MSH3P20585 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
MSH3P20585 SNORA16.2-201ENST00000390991 127 ntBASIC2.77□□□□□ -1.97
MSH3P20585 Y_RNA.604-201ENST00000410574 102 ntBASIC2.77□□□□□ -1.97
MSH3P20585 ARL5AP1-201ENST00000418991 388 ntBASIC2.77□□□□□ -1.97
MSH3P20585 ZNF863P-201ENST00000426746 417 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AL513043.1-201ENST00000439124 535 ntBASIC2.77□□□□□ -1.97
MSH3P20585 RPL23AP58-201ENST00000440453 469 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AL135938.1-201ENST00000443141 297 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AL360271.2-201ENST00000447710 161 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH3P20585 RPS27AP9-201ENST00000477681 438 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AC139453.3-201ENST00000493276 369 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH3P20585 MTCO2P30-201ENST00000503662 364 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.77□□□□□ -1.97
MSH3P20585 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH3P20585 RNU6-1038P-201ENST00000516516 104 ntBASIC2.77□□□□□ -1.97
MSH3P20585 RNA5SP367-201ENST00000516557 118 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms