Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL021397.1-201ENST00000451806 248 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC090255.1-201ENST00000495779 349 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.22□□□□□ -2.05
CLDN3O15551 ADI1P3-201ENST00000549509 470 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 PSMA3P-201ENST00000555485 635 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC025165.5-201ENST00000602802 578 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC022022.2-201ENST00000602989 360 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC116312.1-201ENST00000606841 314 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 RNU6-91P-201ENST00000607774 107 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 Y_RNA.783-201ENST00000613546 102 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 MIR7844-201ENST00000616161 122 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AP000553.5-201ENST00000641933 54 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CLDN3O15551 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CLDN3O15551 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CLDN3O15551 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
CLDN3O15551 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLDN3O15551 SNORD114-1-201ENST00000362705 72 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 SNORA75B-201ENST00000384053 137 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLDN3O15551 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLDN3O15551 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 RNU2-2P-201ENST00000410396 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 RN7SKP284-201ENST00000411002 343 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 Y_RNA.623-201ENST00000411128 95 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC010099.3-201ENST00000423896 409 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.21□□□□□ -2.06
CLDN3O15551 AL589872.1-201ENST00000426602 288 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC027124.2-201ENST00000428249 105 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.21□□□□□ -2.06
CLDN3O15551 AC016691.1-201ENST00000441321 413 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 USP9YP15-201ENST00000442391 422 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.21□□□□□ -2.06
CLDN3O15551 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.21□□□□□ -2.06
CLDN3O15551 snoU109.2-201ENST00000459316 135 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 MTCO2P29-201ENST00000465212 189 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 MED28P2-201ENST00000475771 317 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 RPL38P4-201ENST00000502376 214 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.21□□□□□ -2.06
CLDN3O15551 AC117522.2-201ENST00000510049 657 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC135279.1-201ENST00000543493 504 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 DEFB131E-202ENST00000602581 683 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC018638.7-201ENST00000605836 1114 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.21□□□□□ -2.06
CLDN3O15551 U2.15-201ENST00000611544 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.16-201ENST00000613119 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.12-201ENST00000613778 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.20-201ENST00000613956 192 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.9-201ENST00000615427 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.11-201ENST00000616345 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.2-201ENST00000616535 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.3-201ENST00000617785 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.19-201ENST00000618602 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 RNU2-1-201ENST00000618664 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.6-201ENST00000619225 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.5-201ENST00000619465 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 U2.10-201ENST00000620268 191 ntBASIC2.21□□□□□ -2.06
CLDN3O15551 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.21□□□□□ -2.06
CLDN3O15551 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
CLDN3O15551 AC092881.1-201ENST00000638218 2733 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.2□□□□□ -2.06
CLDN3O15551 SNORD114-19-201ENST00000363072 75 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 RNU5E-5P-201ENST00000365379 116 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 RNU6-39P-201ENST00000384344 107 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLDN3O15551 RNA5SP338-201ENST00000410495 85 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AC114491.1-201ENST00000416095 246 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 XKRYP1-201ENST00000423438 492 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 XKRYP2-201ENST00000432915 492 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLDN3O15551 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.2□□□□□ -2.06
CLDN3O15551 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.2□□□□□ -2.06
CLDN3O15551 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.2□□□□□ -2.06
CLDN3O15551 USP9YP12-201ENST00000450481 570 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.2□□□□□ -2.06
CLDN3O15551 snoU13.15-201ENST00000459407 104 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.2□□□□□ -2.06
CLDN3O15551 AC108078.2-201ENST00000510750 236 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.2□□□□□ -2.06
CLDN3O15551 RNU6-123P-201ENST00000516163 102 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 OR5AQ1P-201ENST00000527596 927 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLDN3O15551 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLDN3O15551 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.2□□□□□ -2.06
CLDN3O15551 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.2□□□□□ -2.06
CLDN3O15551 AL022154.1-201ENST00000604698 785 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AC093788.1-201ENST00000609356 927 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AC092140.2-201ENST00000618027 521 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 U6.42-201ENST00000618440 107 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 AC009878.1-201ENST00000621819 340 ntBASIC2.2□□□□□ -2.06
CLDN3O15551 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CLDN3O15551 AL596028.1-201ENST00000326971 197 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 MIR412-201ENST00000362142 91 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 SNORD3E-201ENST00000362899 217 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 RNA5SP37-201ENST00000365420 130 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CLDN3O15551 RNU6-641P-201ENST00000384006 107 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 CISD1P1-201ENST00000393907 327 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 GSTA9P-201ENST00000406231 611 ntBASIC2.19□□□□□ -2.06
CLDN3O15551 AL356583.2-201ENST00000426536 280 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 154.1 ms