Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 COX6CP10-201ENST00000416832 224 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 RPL17P36-201ENST00000420302 549 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 NDUFB4P7-201ENST00000423198 363 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 AC007389.2-201ENST00000434630 306 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 RPL23AP46-201ENST00000438548 490 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 RPS26P21-201ENST00000475397 348 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 AC139453.3-201ENST00000493276 369 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 SEPT14P8-201ENST00000508026 178 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 AC074198.2-201ENST00000508153 258 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 SNORA31.20-201ENST00000517111 133 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 RNA5SP290-201ENST00000517133 127 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 RAB9BP1-201ENST00000519581 626 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 MIR7702-201ENST00000621931 59 ntBASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.36□□□□□ -1.71
AP4E1Q9UPM8 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC016588.2-201ENST00000632484 3021 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 Y_RNA.44-201ENST00000362676 108 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNU4-90P-201ENST00000362773 141 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNU5E-7P-201ENST00000365290 117 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNA5SP240-201ENST00000365355 128 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNA5SP235-201ENST00000365411 114 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 Y_RNA.504-201ENST00000384481 104 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 Y_RNA.626-201ENST00000411288 95 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AL160275.2-201ENST00000412010 394 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RPL23AP26-201ENST00000412728 464 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AL606753.1-201ENST00000427435 87 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RPS6P12-201ENST00000432491 726 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC098831.1-201ENST00000440661 216 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 TMSB4XP3-201ENST00000445144 114 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC092798.1-201ENST00000458542 409 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNU6-377P-201ENST00000515965 102 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RNU6-861P-201ENST00000516745 106 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 ATP5F1P5-201ENST00000526403 760 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC010928.2-201ENST00000588017 287 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 Z83818.1-201ENST00000603584 150 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 AC090132.2-201ENST00000615881 347 ntBASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
AP4E1Q9UPM8 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AC011266.1-201ENST00000624119 3569 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 RNU6-78P-201ENST00000362897 107 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 RNU4-9P-201ENST00000364951 139 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 SNORD63-201ENST00000384262 68 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AC007560.1-201ENST00000426912 237 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AP000907.1-201ENST00000428428 510 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AL078601.1-201ENST00000444542 271 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 NDUFB4P10-201ENST00000452541 359 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 COX6CP14-201ENST00000469580 174 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AC109327.1-201ENST00000471666 403 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MLLT10P2-201ENST00000506434 249 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 PARP4P3-201ENST00000510265 317 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 RNU6-572P-201ENST00000516724 80 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 SNORA31.18-201ENST00000517043 134 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AP004371.1-201ENST00000525240 214 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MRPS36P4-201ENST00000534436 298 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MIR3921-201ENST00000577308 85 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MIR4284-201ENST00000578924 81 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 BRDTP1-201ENST00000605735 677 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 RNA5SP108-201ENST00000605921 117 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 AC015813.4-201ENST00000610469 179 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 SCARNA4-201ENST00000629045 128 ntBASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
AP4E1Q9UPM8 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.34□□□□□ -1.72
AP4E1Q9UPM8 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
AP4E1Q9UPM8 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
AP4E1Q9UPM8 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
AP4E1Q9UPM8 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms