Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORA40C-201ENST00000391285 128 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RPS4XP7-201ENST00000406274 780 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AL591034.1-201ENST00000407447 340 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 MIR548K-201ENST00000408406 116 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RN7SKP53-201ENST00000411337 315 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 SNRPEP9-201ENST00000436794 238 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 BRK1P2-201ENST00000442875 223 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RPL32P28-201ENST00000443577 397 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RPL23AP67-201ENST00000465341 474 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AC011005.2-201ENST00000487324 359 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RNU6-566P-201ENST00000516790 107 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RNA5SP380-201ENST00000517190 98 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AP000763.2-201ENST00000540641 163 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 MIR4795-201ENST00000584182 89 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AC243960.4-201ENST00000600532 288 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 FTX_3.1-201ENST00000610451 147 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 U4.6-201ENST00000621618 127 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AL031601.2-202ENST00000622650 282 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AC027309.3-201ENST00000623419 351 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 U2.21-201ENST00000637295 81 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 MTND4P29-201ENST00000503122 1372 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC007823.1-201ENST00000569932 1566 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 MIR412-201ENST00000362142 91 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RNU6-140P-201ENST00000384566 108 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 MIR325-201ENST00000385260 98 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AL360182.1-201ENST00000397433 468 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 MIR450B-201ENST00000401182 78 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RNU6-1025P-201ENST00000410629 104 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AL592148.1-201ENST00000413568 445 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RN7SL442P-201ENST00000473804 320 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RNU6-703P-201ENST00000516946 107 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RNA5SP165-201ENST00000517142 115 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC011602.1-201ENST00000546484 331 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AL163153.1-201ENST00000554223 283 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AMZ2P1-203ENST00000565833 850 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC005668.1-201ENST00000571142 476 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC012493.2-201ENST00000595083 291 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC113139.1-201ENST00000605049 239 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC004805.2-201ENST00000605382 482 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AC002044.1-201ENST00000606707 158 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 uc_338.15-201ENST00000615470 191 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 RMST_7.1-201ENST00000621935 268 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 MAPK10-362ENST00000641864 4484 ntBASIC3.31□□□□□ -1.88
VPS4AQ9UN37 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
VPS4AQ9UN37 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 FTLP6-201ENST00000355274 422 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 FRG1CP-201ENST00000358464 769 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 RNU6-266P-201ENST00000364225 107 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 RNU6-384P-201ENST00000364900 104 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 DYNLT3P1-201ENST00000378574 347 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 SNORD116-11-201ENST00000383882 92 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 UBA52P6-201ENST00000399822 382 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 RNA5SP293-201ENST00000410527 113 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AL512844.2-201ENST00000433990 593 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC125238.1-201ENST00000448842 249 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC233279.1-201ENST00000455300 423 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC010401.1-201ENST00000463867 348 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC139453.3-201ENST00000493276 369 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 MIR2276-201ENST00000516886 89 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 RNA5SP454-201ENST00000517231 127 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC107934.2-201ENST00000518653 310 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC093027.1-201ENST00000546698 429 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AL355375.2-201ENST00000574825 175 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC100830.2-201ENST00000581636 240 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 POLR3GP2-201ENST00000588366 668 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AL137843.1-201ENST00000605078 385 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AF117829.1-206ENST00000621883 3802 ntBASIC3.3□□□□□ -1.88
VPS4AQ9UN37 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4AQ9UN37 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RNU6-1252P-201ENST00000363054 104 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RNU6-128P-201ENST00000383976 107 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RNU2-68P-201ENST00000410878 191 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms