Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 RNU6-1083P-201ENST00000384022 107 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 SNORA67.3-201ENST00000384366 140 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 SNORA64-201ENST00000384674 134 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 MIR524-201ENST00000385242 87 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 RN7SKP32-201ENST00000410167 303 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 BX295541.1-201ENST00000417774 250 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 MED13P1-201ENST00000428342 171 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 MTATP6P16-201ENST00000434543 526 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 RBBP4P6-201ENST00000508098 202 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC117522.1-201ENST00000509821 380 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 HMGB3P3-201ENST00000510526 400 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 RNU6-123P-201ENST00000516163 102 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 SNORA18.6-201ENST00000516792 115 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AP002770.2-201ENST00000543613 532 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AL157871.3-201ENST00000557231 293 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AL590229.1-201ENST00000603497 542 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC091152.3-201ENST00000604227 325 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC025811.1-201ENST00000604312 472 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC010378.1-201ENST00000619270 362 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC024940.5-201ENST00000622889 474 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 CU459211.1-201ENST00000635667 749 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 MIR3974-201ENST00000637126 96 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 Z82209.1-201ENST00000422141 2135 ntBASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 AC010329.5-201ENST00000623497 2174 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 CKAP2P1-201ENST00000555477 2049 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 FARSBP1-201ENST00000435808 1778 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 RNU4-91P-201ENST00000364778 135 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 RN7SKP142-201ENST00000411236 328 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC090960.1-201ENST00000421072 306 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 RPL31P35-201ENST00000431058 377 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AL139415.2-201ENST00000431968 163 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AL136380.1-201ENST00000447970 162 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC011753.1-201ENST00000451001 220 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC092001.1-201ENST00000453012 261 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 MTCYBP1-201ENST00000454315 1119 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 RPL9P6-201ENST00000492764 598 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 SNORD19.2-201ENST00000516978 73 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC090572.1-201ENST00000519251 160 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AP002453.2-201ENST00000533503 320 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 ADI1P3-201ENST00000549509 470 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 MIR1273D-201ENST00000577266 86 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 MIR4782-201ENST00000577987 79 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC011890.2-201ENST00000613393 294 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 MTND4P27-201ENST00000450813 1354 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 TEX21P-201ENST00000447107 1476 ntBASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS54Q9P1Q0 AC004944.1-201ENST00000517807 3059 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC103710.2-202ENST00000641454 2853 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 Y_RNA.33-201ENST00000362591 102 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 SNORA38-201ENST00000363946 132 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RNU6-898P-201ENST00000365627 104 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 SNORA75B-201ENST00000384053 137 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RNU6-19P-201ENST00000384718 107 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RNY3P9-201ENST00000384727 106 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 MIR218-1-201ENST00000384999 110 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 SNORA48.3-201ENST00000391081 134 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 SNORA40C-201ENST00000391285 128 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 CISD1P1-201ENST00000393907 327 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RNA5SP425-201ENST00000410336 112 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 RNU6-248P-201ENST00000410720 107 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 USP9YP6-201ENST00000413550 854 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AL353706.1-201ENST00000436728 494 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AL031667.1-201ENST00000440222 725 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC096638.1-201ENST00000444678 216 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AL139109.1-201ENST00000455491 297 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 FAM92A1P2-202ENST00000504766 877 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms